Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq21 208 3e-51 >seq21 Length=6330 Score = 208 bits (230), Expect = 3e-51 Identities = 224/296 (76%), Gaps = 23/296 (8%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | ||||||| | | || | ||| Sbjct 3583 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGTATATAAGTAATTAAAA 3642 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG-------------TG 512 | | || |||||||||||| | |||||| | | || Sbjct 3643 CTTATATGCATAATGAAAGTGAC---AATTGGGAATTTTTTTGAAAAAAAAAGAAAAATG 3699 Query 513 CACCATCGACCGATCCTGATGTC---TTCGGATGGA--TTTGAGTAAGAGCATAGCTGTT 567 ||||| |||||| | || || || | || | |||||||| ||||||| |||| Sbjct 3700 CACCAATGACCGACATTAATTTCATTTTTGAATTAAAGTTTGAGTATGAGCATAAATGTT 3759 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 3760 AGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGG 3819 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||||||||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 3820 AAGCTCGCAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 3875 Score = 140 bits (154), Expect = 1e-30 Identities = 120/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||| || ||||||| ||||| |||| || |||||||||||||| ||| | Sbjct 3145 TTGGGAATGGAGTATAAAATGGGTGGTAATTTTCATCCAAAGCTAAATATTGATGAGAAA 3204 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| |||| ||||||||||||| |||||| |||||||||| ||| Sbjct 3205 CCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAA 3263 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGC 198 || || ||||||| | |||||||||| Sbjct 3264 AGTACCTGAAATTACTTAAAGGGAAGC 3290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999163450