Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq21 592 6e-167 >seq21 Length=6330 Score = 592 bits (656), Expect = 6e-167 Identities = 459/543 (85%), Gaps = 10/543 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| ||||||||||||||||||| Sbjct 5647 CTTTTGGTCTACATGAGATTTCTGTTCTCATTGAGCTTACCTTAGGACACCTGCGTTACC 5588 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||| ||||||||||| || | |||| Sbjct 5587 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCATCTGACAATGTCTTCCGCGAAGATC 5528 Query 127 GGCCCGCG---AAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 || || ||||||| | | ||| | | || | || | | || Sbjct 5527 AGCAATAATAAAATTACCTTAAATCAA-AAACTCTTATTAAAAAATAAGAGGCTCAATAT 5469 Query 184 T---GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCC 240 || ||||||||| || ||| |||||||||||||| |||| || ||||| Sbjct 5468 AACGGAATAAGTAAAATGACATTAAAAGTAGTGGTATTTCAAGATCGCCAAA---GCTCC 5412 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct 5411 CACTTATGCTACACCTTCTAAGCCATTTCACAAAGTCAAACTAGAGTCAAGCTCAACAGG 5352 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 5351 GTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAG 5292 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5291 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 5232 Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 5231 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGTTTGA 5172 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTT 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 5171 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCATTTT 5112 Query 541 CTG 543 ||| Sbjct 5111 CTG 5109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199362272