Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1590 197 6e-48 seq1952 176 2e-41 seq1025 107 8e-21 >seq1590 Length=4531 Score = 197 bits (218), Expect = 6e-48 Identities = 246/333 (74%), Gaps = 17/333 (5%) Strand=Plus/Minus Query 362 GAGGTCCGC-GCTCCGGCTAGGATGCTGGCG-TAATGGTTGTAAGCGGCCCGTCTTGGAA 419 |||| |||| |||||| ||||||| | ||| ||| || || ||||||||| || Sbjct 2822 GAGGACCGCCGCTCCGC----GATGCTGTCTCTAACAGTTTCAACCGACCCGTCTTGAAA 2767 Query 420 CACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAAT 479 |||||||||||||||||||||| ||||||| | ||||| | || || ||| ||| Sbjct 2766 CACGGACCAAGGAGTCTAACATACGTGCGAGTATGCGGGTGGAAGCCCTGTATGCGCAAT 2707 Query 480 GAAAGTGAACGGAGGTGGGAACCCGTGA----GGGT-----GCACCATCGACCGATCCTG 530 || ||||| | ||| | |||| | || ||||| ||||||| | Sbjct 2706 GAGAGTGAGAGTAGGGAGAGGTTCGTGTTTTTGCGTTCCTCGCACCTACGACCGACCACT 2647 Query 531 ATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTA 590 | | || | | | ||||||| |||| ||||| |||||||||||||||||||||| Sbjct 2646 TTCTGTTAGTAGG--TTTGAGTTGTAGCACGTCTGTTAGGACCCGAAAGATGGTGAACTA 2589 Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650 ||||||| |||||||||| ||| |||| ||| |||||||||| |||| | ||| |||| Sbjct 2588 TGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGGCTCGTAGCGATACTGACGTG 2529 Query 651 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| |||||||| |||||||||||||||| Sbjct 2528 CAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 2496 Score = 150 bits (166), Expect = 7e-34 Identities = 135/168 (80%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | ||| |||| ||||||||||| Sbjct 3235 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATAAGTTTCACATAAAGCTAAAT 3176 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 3175 ATTGGCGCGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTTGGAA 3116 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| || || |||||||| || |||||||||| ||| ||| Sbjct 3115 AGAGAGTT-AACAGTGTCTGAAATTGCTGGAAGGGAAGCGATTGAAAC 3069 >seq1952 Length=10943 Score = 176 bits (194), Expect = 2e-41 Identities = 243/335 (73%), Gaps = 19/335 (6%) Strand=Plus/Minus Query 362 GAGGTCCGC-GCTCCGGCTAGGATGCTGGCG-TAATGGTTGTAAGCGGCCCGTCTTGGAA 419 |||| |||| |||||| ||||||| | ||| ||| || || ||||||||| || Sbjct 1425 GAGGACCGCCGCTCCGC----GATGCTGTCTCTAACAGTTTCAACCGACCCGTCTTGAAA 1370 Query 420 CACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAAT 479 |||||||||||||||||||||| ||||||| | ||||| | || || ||| ||| Sbjct 1369 CACGGACCAAGGAGTCTAACATACGTGCGAGTATGCGGGTGGAAGCCCTGTATGCGCAAT 1310 Query 480 GA----AAGTGAACGGAG------GTGGGAACCCGTGAGGGT-GCACCATCGACCGATCC 528 || ||| | | |||| ||| || | | ||||| ||||||| | Sbjct 1309 GAGAGAAAGAGTAGGGAGAGGTTCGTGTTTTTGCGCGCTCCTCGCACCTACGACCGACCA 1250 Query 529 TGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAAC 588 | | || | | | ||||||| |||| ||||| |||||||||||||||||||| Sbjct 1249 CTTTCTGTTAGTAGG--TTTGAGTTGTAGCACGTCTGTTAGGACCCGAAAGATGGTGAAC 1192 Query 589 TATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCG 648 ||||||||| |||||||||| ||| |||| ||| |||||||||| |||| | || || Sbjct 1191 TATGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGGCTCGTAGCGATAATGACG 1132 Query 649 TGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | |||||||| |||||||||||||||| Sbjct 1131 TGCAAATTGTTCGTCAAACTTGGGTATAGGGGCGA 1097 >seq1025 Length=46751 Score = 107 bits (118), Expect = 8e-21 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | || ||| |||||| | | Sbjct 584 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGACAAGTTTAACAGAAAGCTTACT 525 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||| ||||||| |||| ||||||||||||| |||| |||| Sbjct 524 ATTGGCGCGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTGGGAA 465 Query 160 AGAGAGTTAAAA 171 |||||||||||| Sbjct 464 AGAGAGTTAAAA 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079950729350