Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1590 352 5e-95 seq1025 318 1e-84 seq2182 82.4 1e-13 >seq1590 Length=4531 Score = 352 bits (390), Expect = 5e-95 Identities = 236/263 (90%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 419 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 478 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || | ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 479 TTGGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 538 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 598 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| || |||| | |||||||||||||||| Sbjct 599 CTGTGGTAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGTCCTAAAGGATCGATAGG 658 Query 271 CCACACTTTCATGGTTTGTATTC 293 ||| |||||| |||||||||| Sbjct 659 CCATGCTTTCACAGTTTGTATTC 681 >seq1025 Length=46751 Score = 318 bits (352), Expect = 1e-84 Identities = 228/261 (87%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 73 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 132 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| || ||| || || || || ||||||| ||||||||||| Sbjct 133 GGCGGGTGAACAATCCGACACTTGA-GACTTTTGTGTCCCAATGATAGCAAGAGCCGACA 191 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 192 TCGAAGGATTAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCATTTATCCCT 251 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 |||| |||||||||| |||||||||| || |||| | |||||||||||||||||| Sbjct 252 GTGGCAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGTCCTAAAGGATCGATAGGCC 311 Query 273 ACACTTTCATGGTTTGTATTC 293 | |||||| |||||||||| Sbjct 312 ATGCTTTCACAGTTTGTATTC 332 >seq2182 Length=5127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 124/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 481 CTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCAACC 540 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || || | ||| || ||||||||||||| | ||| | Sbjct 541 CTTGAGACCTACTTCAGCCTC---AGGATGCGACGAGCCGACATCGAGGTGCCAACCCTC 597 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| || |||| | || | | |||| ||||||||| ||||||||| Sbjct 598 CCCGTCGATAGGAACTTTCGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854380374432