Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2182 105 2e-20 >seq2182 Length=5127 Score = 105 bits (116), Expect = 2e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 |||| |||| |||||||||||||||||||| ||| || | ||||||||||||||||| Sbjct 3961 CGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCGGAATTA 4020 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 |||||||||||| || ||||||||||| Sbjct 4021 CTGGGCGTAAAGCGTATGTAGGTGGTTT 4048 Score = 73.4 bits (80), Expect = 1e-10 Identities = 117/168 (70%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 ||||| || |||||| | | |||| ||||||||| ||||| | | ||| |||| Sbjct 4120 AGGGGTAAAAGGAATTTTTTGAGTAGTAGTGAAATGCAAAGATACAAAAAAGAAGACCAA 4179 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| || ||||| |||||| ||||| |||||| || ||| || Sbjct 4180 AAGCGAAGGCATTTTACTGGAGCAGCACTGACGCTGAGATACGAAAGTTAAGGTAGCGAA 4239 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 ||||||||||||| |||||| | |||||| ||| ||||| || Sbjct 4240 TGGGATTAGATACCCCAGTAGTCTTAACTGTAAACTATGGATACTCGG 4287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203172362496