Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1944 542 9e-152 >seq1944 Length=1893 Score = 542 bits (600), Expect = 9e-152 Identities = 427/504 (85%), Gaps = 7/504 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| ||||||||| ||||| | ||||||||||| Sbjct 502 TCATTCCAATTACAAAGCATTAAAT-GCCCTGTATTGTTATTTCTCGTCACTACCTCGAA 444 Query 65 G-TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 443 ACTGTTTTCATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCT 384 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| Sbjct 383 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCAATGCCACGGTAGGC 324 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||||| ||||||| ||||||| |||||| |||||||| | |||||||||| || Sbjct 323 CAATACCCTACCGTCGAAAGCTGATAGGTCAGAAACTTGAATGATCTATCGCCGGCTAAA 264 Query 244 GGC-CATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 | | ||||||| |||| |||| ||||||||||||||| || | ||| | |||||||| Sbjct 263 GCCAAATGCGATCCGTTCGGTTACTATGAATCACCAAGGCTCCACAAAGTGGGTTGGTTT 204 Query 303 TTTATCTAATAAATACACCCCTTCCGAAGTCG--GGGTTTTTAGCATGTATTAGCTCTAG 360 | ||||||||||| || ||| ||| ||| | || | | |||||||||||| ||| Sbjct 203 TGTATCTAATAAACACGGCCCCTCCAAAGAAGGAGGCCTGTGCGCATGTATTAGCCATAG 144 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||| ||||||||||||| ||| || ||||||||||| ||||||| |||||||| Sbjct 143 AATTACCATGGTTATCCATGTA-AAAGAGACCATCAAATAAACTATAACTGTTTTAATGA 85 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| Sbjct 84 GCCATTCGCAGTTTCACCGTATA-ACAGCTTATACTTAGACATGCATGGCTTAATCTTTG 26 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 25 AGACAAGCATATGACTACTGGCAG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510365306112