Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F000769155.2_202016-09- 22] 2,297 sequences; 44,034,411 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1999 120 2e-22 >seq1999 Length=46803 Score = 120 bits (132), Expect = 2e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || | |||||| ||||| | |||||| ||| ||| ||||| || |||||| |||| Sbjct 33858 GAGGCCAAGTTGCACACAGCGACCTCGTCGGGACTGGTGTACTCCACGATTTCGCAGCAC 33917 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 |||||||| | || ||| | ||||| || || || || ||||| | |||||||| ||| Sbjct 33918 AGATTACTCGATCGAATGATCCCCAAGTTTTGCTGGTTGCTCTTCCTGTTGCATGCGTCC 33977 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTC 66162 |||||||||||||| || ||||| || || Sbjct 33978 TTGTACATCATGTAGGGGGTGCCTGTTTC 34006 Score = 111 bits (122), Expect = 1e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| || || || | ||| ||||| ||||| || | || || |||||| | Sbjct 34477 CATAAAGAGGTCCGGAACCCACAGGGCCGGAAAGAGGTCCCTGGCGCGCATCTCCTCCTT 34536 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || |||||||| || | || || ||||| |||||||| | |||||| || |||| ||| Sbjct 34537 CCCATGATTTTTTCGGATATCCAGAAACTCGAAGATGTCTGAATGCCAGGGCTCCACGTA 34596 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 | || | |||| | || |||||||| ||||||||||||||||||| | | | ||| Sbjct 34597 CACTGCAAGGCTGCCCTTGCGCTTGCCGCCGCCTTGGTCGACGTAGCGAGAGGCGTCGTT 34656 Query 66520 GAAGAC 66525 |||||| Sbjct 34657 GAAGAC 34662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397556870208080