Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq535 197 6e-48 seq312 167 1e-38 seq89 107 8e-21 >seq535 Length=2091 Score = 197 bits (218), Expect = 6e-48 Identities = 246/333 (74%), Gaps = 17/333 (5%) Strand=Plus/Plus Query 362 GAGGTCCGC-GCTCCGGCTAGGATGCTGGCG-TAATGGTTGTAAGCGGCCCGTCTTGGAA 419 |||| |||| |||||| ||||||| | ||| ||| || || ||||||||| || Sbjct 14 GAGGACCGCCGCTCCGC----GATGCTGTCTCTAACAGTTTCAACCGACCCGTCTTGAAA 69 Query 420 CACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAAT 479 |||||||||||||||||||||| ||||||| | ||||| | || || ||| ||| Sbjct 70 CACGGACCAAGGAGTCTAACATACGTGCGAGTATGCGGGTGGAAGCCCTGTATGCGCAAT 129 Query 480 GAAAGTGAACGGAGGTGGGAACCCGTGA----GGGT-----GCACCATCGACCGATCCTG 530 || ||||| | ||| | |||| | || ||||| ||||||| | Sbjct 130 GAGAGTGAGAGTAGGGAGAGGTTCGTGTTTTTGCGTTCCTCGCACCTACGACCGACCACT 189 Query 531 ATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTA 590 | | || | | | ||||||| |||| ||||| |||||||||||||||||||||| Sbjct 190 TTCTGTTAGTAGG--TTTGAGTTGTAGCACGTCTGTTAGGACCCGAAAGATGGTGAACTA 247 Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650 ||||||| |||||||||| ||| |||| ||| |||||||||| |||| | ||| |||| Sbjct 248 TGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGGCTCGTAGCGATACTGACGTG 307 Query 651 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| |||||||| |||||||||||||||| Sbjct 308 CAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 340 >seq312 Length=11497 Score = 167 bits (184), Expect = 1e-38 Identities = 214/293 (73%), Gaps = 13/293 (4%) Strand=Plus/Minus Query 402 AAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT 461 || || ||||||||| |||||||||||||||||||||||| ||||||| | ||||| Sbjct 1709 AACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATACGTGCGAGTATGCGGGTGG 1650 Query 462 CAAACCCGTGCGCGTAATGA----AAGTGAACGGAG------GTGGGAACCCGTGAGGGT 511 | || || ||| ||||| ||| | | |||| ||| || | | Sbjct 1649 AAGCCCTGTATGCGCAATGAGAGAAAGAGTAGGGAGAGGTTCGTGTTTTTGCGCGCTCCT 1590 Query 512 -GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 ||||| ||||||| | | | || | | | ||||||| ||| ||||| || Sbjct 1589 CGCACCTACGACCGACCACCTTCTGTTAGTAGG--TTTGAGTTGTAGCGCGTCTGTTAGG 1532 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||||||| |||||||||| ||| |||| ||| |||||| Sbjct 1531 ACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGG 1472 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| |||| | || ||||||||| | |||||||| |||||||||||||||| Sbjct 1471 CTCGTAGCGATAATGACGTGCAAATTGTTCGTCAAACTTGGGTATAGGGGCGA 1419 >seq89 Length=80754 Score = 107 bits (118), Expect = 8e-21 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | || ||| |||||| | | Sbjct 77558 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGACAAGTTTAACAGAAAGCTTACT 77617 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||| ||||||| |||| ||||||||||||| |||| |||| Sbjct 77618 ATTGGCGCGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTGGGAA 77677 Query 160 AGAGAGTTAAAA 171 |||||||||||| Sbjct 77678 AGAGAGTTAAAA 77689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079981445750