Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq865 266 7e-69 seq863 96.9 7e-18 >seq865 Length=5557 Score = 266 bits (294), Expect = 7e-69 Identities = 274/354 (77%), Gaps = 12/354 (3%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | ||| | |||||||||| ||| || | |||||| |||| ||||||| Sbjct 1098 ATCTTCACAGACATTCCTATTTCACCGAATCTTTTTCTAAGACAGCATCCAAGTCGTTAC 1157 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1158 ACCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 1217 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGA-TCCC 187 ||||| ||||||||||||||| |||| | | | ||| || | || | | | Sbjct 1218 GTTACAGCCGCCGTTTACTGGAGCTT-ATAAAAATACTTGGA----TAAAAAATATTTTT 1272 Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 ||||| | ||||||| ||||||| |||||| || ||||| || | ||||||| || Sbjct 1273 TTTAACTTACCAGCACTGGGCAGGTGTCAGCCCCCTTACATTGTGATTAAACTTAGCGGA 1332 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGG 307 ||||||||||||| ||||||||||||||| || || ||| ||| | | | || Sbjct 1333 GACCTGTGTTTTTGATAAACAGTCGCTTGGATCTTTTTATTGCAGCC---CTTTG---GG 1386 Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 || || ||||||| ||||||| || | |||||||||||||||||| || |||| Sbjct 1387 CATCCTTTCTCCCGAAGTTACAGGATTATTTTGCCGAGTTCCTTAGAAAAAGTT 1440 >seq863 Length=6273 Score = 96.9 bits (106), Expect = 7e-18 Identities = 75/88 (85%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || ||||| |||||||||||||||||| |||||||| | Sbjct 3265 AAGTCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTG 3324 Query 119 GACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||| | | |||| |||||||||||| Sbjct 3325 GACCGTCAGA-TTACAGCCGCCGTTTAC 3351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062390810240