Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq712 352 5e-95 seq89 324 2e-86 seq865 82.4 1e-13 >seq712 Length=834 Score = 352 bits (390), Expect = 5e-95 Identities = 236/263 (90%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 389 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 330 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || | ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 329 TTGGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 270 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 269 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| || |||| | |||||||||||||||| Sbjct 209 CTGTGGTAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGTCCTAAAGGATCGATAGG 150 Query 271 CCACACTTTCATGGTTTGTATTC 293 ||| |||||| |||||||||| Sbjct 149 CCATGCTTTCACAGTTTGTATTC 127 >seq89 Length=80754 Score = 324 bits (358), Expect = 2e-86 Identities = 229/261 (88%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 80369 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 80428 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| || ||| || || || || ||||||| ||||||||||| Sbjct 80429 GGCGGGTGAACAATCCGACACTTGA-GACTTTTGTGTCCCAATGATAGCAAGAGCCGACA 80487 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 80488 TCGAAGGATAAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 80547 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 |||| |||||||||| |||||||||| || |||| | |||||||||||||||||| Sbjct 80548 GTGGCAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGTCCTAAAGGATCGATAGGCC 80607 Query 273 ACACTTTCATGGTTTGTATTC 293 | |||||| |||||||||| Sbjct 80608 ATGCTTTCACAGTTTGTATTC 80628 Score = 318 bits (352), Expect = 1e-84 Identities = 228/261 (87%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 78069 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 78010 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| || ||| || || || || ||||||| ||||||||||| Sbjct 78009 GGCGGGTGAACAATCCGACACTTGA-GACTTTTGTGTCCCAATGATAGCAAGAGCCGACA 77951 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 77950 TCGAAGGATTAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCATTTATCCCT 77891 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 |||| |||||||||| |||||||||| || |||| | |||||||||||||||||| Sbjct 77890 GTGGCAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGTCCTAAAGGATCGATAGGCC 77831 Query 273 ACACTTTCATGGTTTGTATTC 293 | |||||| |||||||||| Sbjct 77830 ATGCTTTCACAGTTTGTATTC 77810 >seq865 Length=5557 Score = 82.4 bits (90), Expect = 1e-13 Identities = 124/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 550 CTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCAACC 609 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || || | ||| || ||||||||||||| | ||| | Sbjct 610 CTTGAGACCTACTTCAGCCTC---AGGATGCGACGAGCCGACATCGAGGTGCCAACCCTC 666 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| || |||| | || | | |||| ||||||||| ||||||||| Sbjct 667 CCCGTCGATAGGAACTTTCGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854392609440