Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq865 105 2e-20 >seq865 Length=5557 Score = 105 bits (116), Expect = 2e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 |||| |||| |||||||||||||||||||| ||| || | ||||||||||||||||| Sbjct 4026 CGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCGGAATTA 4085 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 |||||||||||| || ||||||||||| Sbjct 4086 CTGGGCGTAAAGCGTATGTAGGTGGTTT 4113 Score = 73.4 bits (80), Expect = 1e-10 Identities = 117/168 (70%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 ||||| || |||||| | | |||| ||||||||| ||||| | | ||| |||| Sbjct 4185 AGGGGTAAAAGGAATTTTTTGAGTAGTAGTGAAATGCAAAGATACAAAAAAGAAGACCAA 4244 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| || ||||| |||||| ||||| |||||| || ||| || Sbjct 4245 AAGCGAAGGCATTTTACTGGAGCAGCACTGACGCTGAGATACGAAAGTTAAGGTAGCGAA 4304 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 ||||||||||||| |||||| | |||||| ||| ||||| || Sbjct 4305 TGGGATTAGATACCCCAGTAGTCTTAACTGTAAACTATGGATACTCGG 4352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203189592320