Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq535 569 7e-160 seq312 212 2e-52 seq712 114 4e-23 seq89 114 4e-23 >seq535 Length=2091 Score = 569 bits (630), Expect = 7e-160 Identities = 424/492 (86%), Gaps = 11/492 (2%) Strand=Plus/Minus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| Sbjct 2083 CCTTAGGACACCTGCGCTATTGTTTCACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 2024 Query 106 ACAATGTCATCAACCCGGATCGGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGT 163 || ||||| || | |||| || | | || | | ||||| || | || | | Sbjct 2023 ACTATGTCTTCCGCATTGATCAGCGCACTAAAGGCGCCTTAAGGCAAAAACACATGC--- 1967 Query 164 GAAG-ACCAGT-TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCA 221 ||| | || || || | || ||||||||| || | ||||||||||||||||| Sbjct 1966 -AAGCATGCGTCTCAACTCGACGGAATAAGTAAAACGACACTGAGGGTAGTGGTATTTCA 1908 Query 222 CTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGAC 281 ||||||| |||||||| ||| ||||||| |||||||| || ||||||||||||| Sbjct 1907 AGATCGCCGAA---GCTCCCACCTATGCTACACCCCTCAAGTCGTTCCACAAAGTCGGAC 1851 Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1850 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 1791 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1790 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCAC 1731 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 1730 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAACGTCATAGTTACGTCCGCCG 1671 Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 || ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 1670 TTAACCCGCGCTTGATTGAATTTCATCACATTGACATTCAGAGCACTGGGCAGAAATCAC 1611 Query 522 ATTGCGTCAACA 533 |||||||||||| Sbjct 1610 ATTGCGTCAACA 1599 >seq312 Length=11497 Score = 212 bits (234), Expect = 2e-52 Identities = 132/142 (93%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 24 ATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAACGTCATAGTT 83 Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 511 || |||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||| Sbjct 84 ACGTCCGCCGTTAACCCGCGCTTGATTGAATTTCATCACATTGACATTCAGAGCACTGGG 143 Query 512 CAGAAATCACATTGCGTCAACA 533 |||||||||| ||||||||||| Sbjct 144 CAGAAATCACGTTGCGTCAACA 165 >seq712 Length=834 Score = 114 bits (126), Expect = 4e-23 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| |||||||||||||||| ||| Sbjct 93 CTTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGCTATT 34 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCC 99 |||| |||||||||||||||||||||||||||| Sbjct 33 GTTTCACAGATGTGCCGCCCCAGCCAAACTCCC 1 >seq89 Length=80754 Score = 114 bits (126), Expect = 4e-23 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| |||||||||||||||| ||| Sbjct 80662 CTTTTGGTCAACATGAGATTTCTGTTCTCACTGAGCTTGCCTTAGGACACCTGCGCTATT 80721 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCC 99 |||| |||||||||||||||||||||||||||| Sbjct 80722 GTTTCACAGATGTGCCGCCCCAGCCAAACTCCC 80754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635185855520