Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F001305735.1_202015-10- 02] 865 sequences; 44,563,857 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq561 443 6e-122 >seq561 Length=1818 Score = 443 bits (490), Expect = 6e-122 Identities = 366/440 (83%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| ||||||||| ||||| | ||||||||||| Sbjct 1381 TCATTCCAATTACAAAGCATTAAAT-GCCCTGTATTGTTATTTCTCGTCACTACCTCGAA 1439 Query 65 G-TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1440 ACTGTTTTCATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCT 1499 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| Sbjct 1500 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCAATGCCACGGTAGGC 1559 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||||| ||||||| ||||||| |||||| |||||||| | |||||||||| || Sbjct 1560 CAATACCCTACCGTCGAAAGCTGATAGGTCAGAAACTTGAATGATCTATCGCCGGCTAAA 1619 Query 244 GGC-CATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 | | ||||||| |||| |||| ||||||||||||||| || | ||| | |||||||| Sbjct 1620 GCCAAATGCGATCCGTTCGGTTACTATGAATCACCAAGGCTCCACAAAGTGGGTTGGTTT 1679 Query 303 TTTATCTAATAAATACACCCCTTCCGAAGTCG--GGGTTTTTAGCATGTATTAGCTCTAG 360 | ||||||||||| || ||| ||| ||| | || | | |||||||||||| ||| Sbjct 1680 TGTATCTAATAAACACGGCCCCTCCAAAGAAGGAGGCCTGTGCGCATGTATTAGCCATAG 1739 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||| ||||||||||||| ||| || ||||||||||| ||||||| |||||||| Sbjct 1740 AATTACCATGGTTATCCATGTA-AAAGAGACCATCAAATAAACTATAACTGTTTTAATGA 1798 Query 421 GCCATTCGCAGTTTCACTGT 440 ||||||||||||||||| || Sbjct 1799 GCCATTCGCAGTTTCACCGT 1818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510386935040