Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019455.1_202017-03- 06] 1,291 sequences; 42,346,107 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq949 197 6e-48 >seq949 Length=3495 Score = 197 bits (218), Expect = 6e-48 Identities = 246/333 (74%), Gaps = 17/333 (5%) Strand=Plus/Plus Query 362 GAGGTCCGC-GCTCCGGCTAGGATGCTGGCG-TAATGGTTGTAAGCGGCCCGTCTTGGAA 419 |||| |||| |||||| ||||||| | ||| ||| || || ||||||||| || Sbjct 707 GAGGACCGCCGCTCCGC----GATGCTGTCTCTAACAGTTTCAACCGACCCGTCTTGAAA 762 Query 420 CACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAAT 479 |||||||||||||||||||||| ||||||| | ||||| | || || ||| ||| Sbjct 763 CACGGACCAAGGAGTCTAACATACGTGCGAGTATGCGGGTGGAAGCCCTGTATGCGCAAT 822 Query 480 GAAAGTGAACGGAGGTGGGAACCCGTGA----GGGT-----GCACCATCGACCGATCCTG 530 || ||||| | ||| | |||| | || ||||| ||||||| | Sbjct 823 GAGAGTGAGAGTAGGGAGAGGTTCGTGTTTTTGCGTTCCTCGCACCTACGACCGACCACT 882 Query 531 ATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTA 590 | | || | | | ||||||| |||| ||||| |||||||||||||||||||||| Sbjct 883 TTCTGTTAGTAGG--TTTGAGTTGTAGCACGTCTGTTAGGACCCGAAAGATGGTGAACTA 940 Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650 ||||||| |||||||||| ||| |||| ||| |||||||||| |||| | ||| |||| Sbjct 941 TGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGGCTCGTAGCGATACTGACGTG 1000 Query 651 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| |||||||| |||||||||||||||| Sbjct 1001 CAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 1033 Score = 150 bits (166), Expect = 7e-34 Identities = 135/168 (80%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | ||| |||| ||||||||||| Sbjct 294 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATAAGTTTCACATAAAGCTAAAT 353 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 354 ATTGGCGCGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTTGGAA 413 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| || || |||||||| || |||||||||| ||| ||| Sbjct 414 AGAGAGTT-AACAGTGTCTGAAATTGCTGGAAGGGAAGCGATTGAAAC 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079972308050