Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq362 197 6e-48 seq414 167 1e-38 seq481 107 8e-21 >seq362 Length=5155 Score = 197 bits (218), Expect = 6e-48 Identities = 246/333 (74%), Gaps = 17/333 (5%) Strand=Plus/Plus Query 362 GAGGTCCGC-GCTCCGGCTAGGATGCTGGCG-TAATGGTTGTAAGCGGCCCGTCTTGGAA 419 |||| |||| |||||| ||||||| | ||| ||| || || ||||||||| || Sbjct 2318 GAGGACCGCCGCTCCGC----GATGCTGTCTCTAACAGTTTCAACCGACCCGTCTTGAAA 2373 Query 420 CACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAAT 479 |||||||||||||||||||||| ||||||| | ||||| | || || ||| ||| Sbjct 2374 CACGGACCAAGGAGTCTAACATACGTGCGAGTATGCGGGTGGAAGCCCTGTATGCGCAAT 2433 Query 480 GAAAGTGAACGGAGGTGGGAACCCGTGA----GGGT-----GCACCATCGACCGATCCTG 530 || ||||| | ||| | |||| | || ||||| ||||||| | Sbjct 2434 GAGAGTGAGAGTAGGGAGAGGTTCGTGTTTTTGCGTTCCTCGCACCTACGACCGACCACT 2493 Query 531 ATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTA 590 | | || | | | ||||||| |||| ||||| |||||||||||||||||||||| Sbjct 2494 TTCTGTTAGTAGG--TTTGAGTTGTAGCACGTCTGTTAGGACCCGAAAGATGGTGAACTA 2551 Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650 ||||||| |||||||||| ||| |||| ||| |||||||||| |||| | ||| |||| Sbjct 2552 TGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGGCTCGTAGCGATACTGACGTG 2611 Query 651 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| |||||||| |||||||||||||||| Sbjct 2612 CAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 2644 Score = 150 bits (166), Expect = 7e-34 Identities = 135/168 (80%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | ||| |||| ||||||||||| Sbjct 1905 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATAAGTTTCACATAAAGCTAAAT 1964 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 1965 ATTGGCGCGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTTGGAA 2024 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| || || |||||||| || |||||||||| ||| ||| Sbjct 2025 AGAGAGTT-AACAGTGTCTGAAATTGCTGGAAGGGAAGCGATTGAAAC 2071 >seq414 Length=11108 Score = 167 bits (184), Expect = 1e-38 Identities = 214/293 (73%), Gaps = 13/293 (4%) Strand=Plus/Minus Query 402 AAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT 461 || || ||||||||| |||||||||||||||||||||||| ||||||| | ||||| Sbjct 1382 AACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATACGTGCGAGTATGCGGGTGG 1323 Query 462 CAAACCCGTGCGCGTAATGA----AAGTGAACGGAG------GTGGGAACCCGTGAGGGT 511 | || || ||| ||||| ||| | | |||| ||| || | | Sbjct 1322 AAGCCCTGTATGCGCAATGAGAGAAAGAGTAGGGAGAGGTTCGTGTTTTTGCGCGCTCCT 1263 Query 512 -GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 ||||| ||||||| | | | || | | | ||||||| ||| ||||| || Sbjct 1262 CGCACCTACGACCGACCACCTTCTGTTAGTAGG--TTTGAGTTGTAGCGCGTCTGTTAGG 1205 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||||||| |||||||||| ||| |||| ||| |||||| Sbjct 1204 ACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGG 1145 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| |||| | || ||||||||| | |||||||| |||||||||||||||| Sbjct 1144 CTCGTAGCGATAATGACGTGCAAATTGTTCGTCAAACTTGGGTATAGGGGCGA 1092 >seq481 Length=49236 Score = 107 bits (118), Expect = 8e-21 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | || ||| |||||| | | Sbjct 686 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGACAAGTTTAACAGAAAGCTTACT 627 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||| ||||||| |||| ||||||||||||| |||| |||| Sbjct 626 ATTGGCGCGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTGGGAA 567 Query 160 AGAGAGTTAAAA 171 |||||||||||| Sbjct 566 AGAGAGTTAAAA 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079973251850