Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq441 542 9e-152 seq703 217 4e-54 >seq441 Length=1824 Score = 542 bits (600), Expect = 9e-152 Identities = 427/504 (85%), Gaps = 7/504 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| ||||||||| ||||| | ||||||||||| Sbjct 536 TCATTCCAATTACAAAGCATTAAAT-GCCCTGTATTGTTATTTCTCGTCACTACCTCGAA 478 Query 65 G-TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 477 ACTGTTTTCATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCT 418 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| Sbjct 417 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCAATGCCACGGTAGGC 358 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||||| ||||||| ||||||| |||||| |||||||| | |||||||||| || Sbjct 357 CAATACCCTACCGTCGAAAGCTGATAGGTCAGAAACTTGAATGATCTATCGCCGGCTAAA 298 Query 244 GGC-CATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 | | ||||||| |||| |||| ||||||||||||||| || | ||| | |||||||| Sbjct 297 GCCAAATGCGATCCGTTCGGTTACTATGAATCACCAAGGCTCCACAAAGTGGGTTGGTTT 238 Query 303 TTTATCTAATAAATACACCCCTTCCGAAGTCG--GGGTTTTTAGCATGTATTAGCTCTAG 360 | ||||||||||| || ||| ||| ||| | || | | |||||||||||| ||| Sbjct 237 TGTATCTAATAAACACGGCCCCTCCAAAGAAGGAGGCCTGTGCGCATGTATTAGCCATAG 178 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||| ||||||||||||| ||| || ||||||||||| ||||||| |||||||| Sbjct 177 AATTACCATGGTTATCCATGTA-AAAGAGACCATCAAATAAACTATAACTGTTTTAATGA 119 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| Sbjct 118 GCCATTCGCAGTTTCACCGTATA-AAAGCTTATACTTAGACATGCATGGCTTAATCTTTG 60 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 59 AGACAAGCATATGACTACTGGCAG 36 >seq703 Length=3132 Score = 217 bits (240), Expect = 4e-54 Identities = 169/198 (85%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 309 TAATAAATACACCCCTTCCGAAGTCGGGGT--TTTTAGCATGTATTAGCTCTAGAATTAC 366 ||||||| || ||| ||| ||| || | | | |||||||||||| ||||||||| Sbjct 1 TAATAAACACGGCCCCTCCAAAGAAGGAGGCCTGTGCGCATGTATTAGCCATAGAATTAC 60 Query 367 CACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 || ||||||||||||| ||| || ||||||||||| ||||||| |||||||||||||| Sbjct 61 CATGGTTATCCATGTAA-AAGAGACCATCAAATAAACTATAACTGTTTTAATGAGCCATT 119 Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 ||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||| Sbjct 120 CGCAGTTTCACCGTACAAAA-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 178 Query 487 GCATATGACTACTGGCAG 504 |||||||||||||||||| Sbjct 179 GCATATGACTACTGGCAG 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510381165312