Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019465.1_202017-03- 06] 1,247 sequences; 43,895,689 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq236 136 1e-27 >seq236 Length=763 Score = 136 bits (150), Expect = 1e-27 Identities = 225/321 (70%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 29674 CTGGACCATATCGGTATTGACCCGTCAGGGGTGGGGCAGATTCTGGATTCACTGGCGGAA 29733 |||||| | || || |||||| ||||| |||| |||| ||| ||||| ||| Sbjct 631 CTGGACAAGATTGGCTGTGACCCTGCAGGGCTGGGTGGGATTACCGATGCACTGCACGAA 572 Query 29734 GCCGGGATCCCCGACGGAATTGTGGTGGGGATAAGCCAGGGCTGGAAACTGGGCGGGGCC 29793 || ||||| || || | || | || || ||||||||||||||| ||| ||| Sbjct 571 GCAGGGATACCGCCCGAGAAGATGATCGGCATCTCCCAGGGCTGGAAACTCCACGGCGCC 512 Query 29794 ATTAAAACCACCGAGCGCAAACTGGCTGAAGGGGTGCTGGTGCATGGTGACCAGCCCCTG 29853 || || | || ||||| | || || || || ||||||| | | ||||| ||| Sbjct 511 ATCCTGACGGCAGAACGCAAGTTAGCCGAGGGTGTATTGGTGCACAGCGGACAGCCGCTG 452 Query 29854 ATGGCCTGGTGTGTCGGCAATGCCCGGGTGGAGCCTAAAGGTAACGCCATTCTTATCACC 29913 ||||| ||||| || |||||||| ||| ||||| ||| |||||| | | || || Sbjct 451 ATGGCGTGGTGCGTAGGCAATGCGAAGGTAGAGCCGCGAGGCAACGCCGTGATGATTACA 392 Query 29914 AAACAGGC--CAGTGGACGGGGAAAAATTGACCCGCTGATGGCGCTGTTCAATGCGGTCT 29971 ||||| || ||| ||||||| ||| || ||||||||||||||| ||| || || || Sbjct 391 AAACAAGCAGCAG-GGACGGG-AAAGATCGACCCGCTGATGGCGACGTTTAACGCTGTGA 334 Query 29972 CCCTGATGTCCCTTAACCCGG 29992 | |||||||| | ||||||| Sbjct 333 CGCTGATGTCAATGAACCCGG 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175543000498812