Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019475.1_202017-03- 06] 1,594 sequences; 41,397,365 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1048 443 6e-122 seq256 269 8e-70 seq293 77.0 1e-11 >seq1048 Length=1610 Score = 443 bits (490), Expect = 6e-122 Identities = 364/437 (83%), Gaps = 6/437 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| ||||||||| ||||| | ||||||||||| Sbjct 435 TCATTCCAATTACAAAGCATTAAAT-GCCCTGTATTGTTATTTCTCGTCACTACCTCGAA 377 Query 65 G-TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 376 ACTGTTTTCATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCT 317 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| Sbjct 316 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCAATGCCACGGTAGGC 257 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || |||||| ||||||| ||||||| |||||| |||||||| | |||||||||| || Sbjct 256 CAATACCCTACCGTCGAAAGCTGATAGGTCAGAAACTTGAATGATCTATCGCCGGCTAAA 197 Query 244 GGC-CATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 | | ||||||| |||| |||| ||||||||||||||| || | ||| | |||||||| Sbjct 196 GCCAAATGCGATCCGTTCGGTTACTATGAATCACCAAGGCTCCACAAAGTGGGTTGGTTT 137 Query 303 TTTATCTAATAAATACACCCCTTCCGAAGTCG--GGGTTTTTAGCATGTATTAGCTCTAG 360 | ||||||||||| || ||| ||| ||| | || | | |||||||||||| ||| Sbjct 136 TGTATCTAATAAACACGGCCCCTCCAAAGAAGGAGGCCTGTGCGCATGTATTAGCCATAG 77 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||| ||||||||||||| ||| || ||||||||||| ||||||| |||||||| Sbjct 76 AATTACCATGGTTATCCATGTA-AAAGAGACCATCAAATAAACTATAACTGTTTTAATGA 18 Query 421 GCCATTCGCAGTTTCAC 437 ||||||||||||||||| Sbjct 17 GCCATTCGCAGTTTCAC 1 >seq256 Length=826 Score = 269 bits (298), Expect = 8e-70 Identities = 209/245 (85%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 262 GTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACC 321 |||| ||||||||||||||| || | ||| | ||||||||| ||||||||||| || | Sbjct 4 GTTACTATGAATCACCAAGGCTCCACAAAGTGGGTTGGTTTTGTATCTAATAAACACGGC 63 Query 322 CCTTCCGAAGTCGGGGT--TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379 || ||| ||| || | | | |||||||||||| ||||||||||| |||||||||| Sbjct 64 CCCTCCAAAGAAGGAGGCCTGTGCGCATGTATTAGCCATAGAATTACCATGGTTATCCAT 123 Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439 ||| ||| || ||||||||||| ||||||| ||||||||||||||||||||||||| | Sbjct 124 GTAA-AAGAGACCATCAAATAAACTATAACTGTTTTAATGAGCCATTCGCAGTTTCACCG 182 Query 440 TATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TATAAAA-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 241 Query 500 GGCAG 504 ||||| Sbjct 242 GGCAG 246 >seq293 Length=224335 Score = 77.0 bits (84), Expect = 1e-11 Identities = 118/163 (72%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC---GAAGTCGGGGTTTTTAGCATGTAT 351 ||||| ||| ||||||||||| || ||| ||| |||| | || | | || |||| Sbjct 130470 GTTGGCTTTGTATCTAATAAACACGGCCCCTCCAGAGAAGAC--GGCCTGTGCCAAGTAT 130413 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTG 411 | || | ||||||| |||||||||| || |||| || ||||| | || ||| || Sbjct 130412 TCGCCACAAAATTACCCTGGTTATCCATATA-TAAGAGACCATCAATCACACTATATTTG 130354 Query 412 ATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||||||||| |||| ||||| |||| | | |||||| Sbjct 130353 -TTTAGTGAGCCATTTGCAGCTTCACCATATAAACT-CTTATA 130313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510375924224