Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq978 197 6e-48 seq1299 167 1e-38 seq584 107 8e-21 >seq978 Length=3519 Score = 197 bits (218), Expect = 6e-48 Identities = 246/333 (74%), Gaps = 17/333 (5%) Strand=Plus/Plus Query 362 GAGGTCCGC-GCTCCGGCTAGGATGCTGGCG-TAATGGTTGTAAGCGGCCCGTCTTGGAA 419 |||| |||| |||||| ||||||| | ||| ||| || || ||||||||| || Sbjct 723 GAGGACCGCCGCTCCGC----GATGCTGTCTCTAACAGTTTCAACCGACCCGTCTTGAAA 778 Query 420 CACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAAT 479 |||||||||||||||||||||| ||||||| | ||||| | || || ||| ||| Sbjct 779 CACGGACCAAGGAGTCTAACATACGTGCGAGTATGCGGGTGGAAGCCCTGTATGCGCAAT 838 Query 480 GAAAGTGAACGGAGGTGGGAACCCGTGA----GGGT-----GCACCATCGACCGATCCTG 530 || ||||| | ||| | |||| | || ||||| ||||||| | Sbjct 839 GAGAGTGAGAGTAGGGAGAGGTTCGTGTTTTTGCGTTCCTCGCACCTACGACCGACCACT 898 Query 531 ATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTA 590 | | || | | | ||||||| |||| ||||| |||||||||||||||||||||| Sbjct 899 TTCTGTTAGTAGG--TTTGAGTTGTAGCACGTCTGTTAGGACCCGAAAGATGGTGAACTA 956 Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650 ||||||| |||||||||| ||| |||| ||| |||||||||| |||| | ||| |||| Sbjct 957 TGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGGCTCGTAGCGATACTGACGTG 1016 Query 651 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| |||||||| |||||||||||||||| Sbjct 1017 CAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 1049 Score = 150 bits (166), Expect = 7e-34 Identities = 135/168 (80%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | ||| |||| ||||||||||| Sbjct 310 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATAAGTTTCACATAAAGCTAAAT 369 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 370 ATTGGCGCGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTTGGAA 429 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| || || |||||||| || |||||||||| ||| ||| Sbjct 430 AGAGAGTT-AACAGTGTCTGAAATTGCTGGAAGGGAAGCGATTGAAAC 476 >seq1299 Length=10875 Score = 167 bits (184), Expect = 1e-38 Identities = 214/293 (73%), Gaps = 13/293 (4%) Strand=Plus/Minus Query 402 AAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT 461 || || ||||||||| |||||||||||||||||||||||| ||||||| | ||||| Sbjct 1129 AACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATACGTGCGAGTATGCGGGTGG 1070 Query 462 CAAACCCGTGCGCGTAATGA----AAGTGAACGGAG------GTGGGAACCCGTGAGGGT 511 | || || ||| ||||| ||| | | |||| ||| || | | Sbjct 1069 AAGCCCTGTATGCGCAATGAGAGAAAGAGTAGGGAGAGGTTCGTGTTTTTGCGCGCTCCT 1010 Query 512 -GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 ||||| ||||||| | | | || | | | ||||||| ||| ||||| || Sbjct 1009 CGCACCTACGACCGACCACCTTCTGTTAGTAGG--TTTGAGTTGTAGCGCGTCTGTTAGG 952 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||||||| |||||||||| ||| |||| ||| |||||| Sbjct 951 ACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGG 892 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| |||| | || ||||||||| | |||||||| |||||||||||||||| Sbjct 891 CTCGTAGCGATAATGACGTGCAAATTGTTCGTCAAACTTGGGTATAGGGGCGA 839 >seq584 Length=44673 Score = 107 bits (118), Expect = 8e-21 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | || ||| |||||| | | Sbjct 439 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGACAAGTTTAACAGAAAGCTTACT 380 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| ||||||||||||| ||||||| |||| ||||||||||||| |||| |||| Sbjct 379 ATTGGCGCGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTGGGAA 320 Query 160 AGAGAGTTAAAA 171 |||||||||||| Sbjct 319 AGAGAGTTAAAA 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079968489950