Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq978 352 5e-95 seq84 327 2e-87 seq584 208 1e-51 seq1323 127 3e-27 >seq978 Length=3519 Score = 352 bits (390), Expect = 5e-95 Identities = 236/263 (90%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3127 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 3068 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || | ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 3067 TTGGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 3008 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3007 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 2948 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| || |||| | |||||||||||||||| Sbjct 2947 CTGTGGTAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGTCCTAAAGGATCGATAGG 2888 Query 271 CCACACTTTCATGGTTTGTATTC 293 ||| |||||| |||||||||| Sbjct 2887 CCATGCTTTCACAGTTTGTATTC 2865 >seq84 Length=1176 Score = 327 bits (362), Expect = 2e-87 Identities = 225/254 (89%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 703 GGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 644 Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 643 GAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGG 584 Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 583 ATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAA 524 Query 220 CTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTT 279 |||||||| |||||| || | ||| | || | |||||||| ||||| | |||| Sbjct 523 CTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTT 464 Query 280 CATGGTTTGTATTC 293 || ||| ||||||| Sbjct 463 CACGGTCTGTATTC 450 >seq584 Length=44673 Score = 208 bits (230), Expect = 1e-51 Identities = 142/160 (89%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 28 ATGATAGCAAGAGCCGACATCGAAGGATTAAAAAGCAACGTCGCTATGAACGCTTGGCTG 87 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 |||||||||| |||||||||||| |||||||||| |||||||||| || |||| | Sbjct 88 CCACAAGCCATTTATCCCTGTGGCAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGT 147 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||||||| |||||| |||||||||| Sbjct 148 CCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 187 >seq1323 Length=2253 Score = 127 bits (140), Expect = 3e-27 Identities = 78/83 (94%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 110 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 51 Query 93 AGTGGGTGAACAATCCAACGCTT 115 | ||||||||||||| || ||| Sbjct 50 GGCGGGTGAACAATCCGACACTT 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854387448864