Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq978 598 1e-168 seq84 170 6e-40 >seq978 Length=3519 Score = 598 bits (662), Expect = 1e-168 Identities = 454/531 (85%), Gaps = 11/531 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| |||||||||||||||| ||| Sbjct 2831 CTTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGCTATT 2772 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||||||||||||||||||||||||||||||| ||||| || | |||| Sbjct 2771 GTTTCACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCTTCCGCATTGATC 2712 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAG-ACCAGT-TCCGCTTCA 182 || | | || | | ||||| || | || | | ||| | || || || | Sbjct 2711 AGCGCACTAAAGGCGCCTTAAGGCAAAAACACATGC----AAGCATGCGTCTCAACTCGA 2656 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| || | ||||||||||||||||| ||||||| ||||||| Sbjct 2655 CGGAATAAGTAAAACGACACTGAGGGTAGTGGTATTTCAAGATCGCCGAA---GCTCCCA 2599 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 | ||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct 2598 CCTATGCTACACCCCTCAAGTCGTTCCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 2539 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2538 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 2479 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2478 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGAGG 2419 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| Sbjct 2418 CATTTGGCTACCTTAAGAACGTCATAGTTACGTCCGCCGTTAACCCGCGCTTGATTGAAT 2359 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2358 TTCATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 2308 >seq84 Length=1176 Score = 170 bits (188), Expect = 6e-40 Identities = 106/114 (93%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 114 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 55 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 54 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 1 Score = 118 bits (130), Expect = 3e-24 Identities = 103/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 416 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 357 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 356 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 302 Query 127 GGCCCGCG 134 || |||| Sbjct 301 GGGTCGCG 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635175978912