Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyclospora_20cayetanensis_20[genbank_20GCA_5F002019905.1_202017-03- 06] 1,469 sequences; 43,010,379 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq322 354 2e-95 seq579 266 1e-68 seq1148 260 4e-67 >seq322 Length=2046 Score = 354 bits (392), Expect = 2e-95 Identities = 400/535 (75%), Gaps = 58/535 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 532 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 473 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 413 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 412 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 353 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 352 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 293 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC----- 286 || | |||||| | | ||||| || ||||||| || |||| Sbjct 292 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 233 Query 287 --------------CGAAGGGC-------GTTGGTTTTTTATCTAATAAATACA------ 319 || |||| ||||| |||| |||| |||||| || Sbjct 232 CCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 174 Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 |||| ||||| ||||| | |||||||||||||||||||||||||| || Sbjct 173 CCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 116 Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||| |||| | || | | | |||| ||| ||||||||||||||||||||||| Sbjct 115 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 56 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAG 482 |||||||||||||| | | |||||||||||||||||||||||||||||| Sbjct 55 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAG 1 >seq579 Length=1416 Score = 266 bits (294), Expect = 1e-68 Identities = 202/236 (86%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| ||||||||| ||||| | ||||||||||| Sbjct 1180 TCATTCCAATTACAAAGCATTAAAT-GCCCTGTATTGTTATTTCTCGTCACTACCTCGAA 1238 Query 65 G-TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1239 ACTGTTTTCATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCT 1298 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| Sbjct 1299 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCAATGCCACGGTAGGC 1358 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || || |||||| ||||||| ||||||| |||||| |||||||| | ||||||||| Sbjct 1359 CAATACCCTACCGTCGAAAGCTGATAGGTCAGAAACTTGAATGATCTATCGCCGGC 1414 >seq1148 Length=3205 Score = 260 bits (288), Expect = 4e-67 Identities = 207/245 (84%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 262 GTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACC 321 |||| ||||||||||||||| || | ||| | ||||||| | ||||||||||| || | Sbjct 3201 GTTACTATGAATCACCAAGGCTCCACAAAGTGGGTTGGTTCTGTATCTAATAAACACGGC 3142 Query 322 CCTTCCGAAGTCGGGGT--TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379 || ||| ||| || | | | |||||||||||| ||||||||||| |||||||||| Sbjct 3141 CCCTCCAAAGAAGGAGGCCTGTGCGCATGTATTAGCCATAGAATTACCATGGTTATCCAT 3082 Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439 ||| ||| || ||||||||||| ||||||| ||||||||||||||||||||||||| | Sbjct 3081 GTAA-AAGAGACCATCAAATAAACTATAACTGTTTTAATGAGCCATTCGCAGTTTCACCG 3023 Query 440 TATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 || | | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3022 TACAAAA-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 2964 Query 500 GGCAG 504 ||||| Sbjct 2963 GGCAG 2959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510377812224