Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2490 264 2e-68 seq2320 132 7e-29 seq631 102 1e-19 >seq2490 Length=1873 Score = 264 bits (292), Expect = 2e-68 Identities = 192/219 (88%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||| | Sbjct 207 GTACAAAGGGCAGGGACGTAATCAGCGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 264 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||| ||| ||||||||||||||||||||| ||||| || ||| |||||||| Sbjct 265 CTCGTTTAAGATCAAAAATTGCAATGATCTATCCCCAGCACGACGATGTTTAAAAGATTA 324 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| |||| |||| |||| || | ||| ||| | |||||||||||||||||||| Sbjct 325 CCCACACCTCTCGGTGAAGGAGACACTCTC--TGACATCGTCAGTGTAGCGCGCGTGCGG 382 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 219 ||||||||||||||||||||||||||||||||||||||| Sbjct 383 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 421 >seq2320 Length=2272 Score = 132 bits (146), Expect = 7e-29 Identities = 134/173 (77%), Gaps = 11/173 (6%) Strand=Plus/Plus Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGAT 118 ||||||||||||| ||||| ||| ||| | ||||||| | | ||| ||||| Sbjct 750 CCTCGTTGAAGACTGACAAT---------CTACCCCTACCACGATGCACTCTCACAAGAT 800 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| | || ||| | |||||| | || ||||||| | ||||||||||||| |||||| Sbjct 801 TACCAAGCCCCGTCTGTCAAGGTAAGAG-CTCGTTGCCTGCATCAGTGTAGCGAGCGTGC 859 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||||||||| |||| |||| ||||||||||||||||| || ||| || Sbjct 860 AGCCCAGAACATCTCCGGGCTTCACCGACCTGTTATTGCCTCAGACGTCCTTG 912 >seq631 Length=28019 Score = 102 bits (112), Expect = 1e-19 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 10311 CTCGTTGCATGCATCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGAC 10252 Query 208 CTGT 211 |||| Sbjct 10251 CTGT 10248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751975121725