Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq535 208 1e-51 seq1858 161 2e-37 seq3328 95.1 2e-17 >seq535 Length=221240 Score = 208 bits (230), Expect = 1e-51 Identities = 202/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 ||||||||| |||| ||||||||| |||||||| || ||||||||||||||||||| | | Sbjct 176128 GTAGGGTAAGACTAGCCTGTCTCACGACGGTCTCAAGCCAGCTCACGTTCCCTATTGGCG 176187 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 || ||||||||| || ||| || | || | | | || ||||||||||||| ||||| Sbjct 176188 GGGGAACAATCCGACACTTTGAGACTACTACGACTTTGTGGTAGGAAGAGCCGATATCGA 176247 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||| |||||| |||| ||||||||| || ||| ||| |||| |||||||||||| | Sbjct 176248 AGGGTCAAAATGCAATGTCGCTATGGAC---TGGGTGCAACAAACCAGTTATCCCTACGA 176304 Query 217 TAAC-TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACA 275 |||| ||||||| |||| |||||| || ||| | ||| |||||||| ||| | Sbjct 176305 TAACTTTTTCTGACACCCCTAGCCGAAAGGTTCTCAGACCTACAGGATCGACTGGCAATG 176364 Query 276 CTTTCATGGTTTGTATTC 293 |||||| |||||||||| Sbjct 176365 CTTTCACAGTTTGTATTC 176382 >seq1858 Length=3004 Score = 161 bits (178), Expect = 2e-37 Identities = 107/119 (90%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 176 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCT 60 Query 236 AGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||| | ||| | | | ||||||||||||||||||||| |||||| ||||||||||| Sbjct 61 AGCTTAAAACTCCTAAAGACTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTCA 119 >seq3328 Length=14947 Score = 95.1 bits (104), Expect = 2e-17 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||| | |||||||| |||||||||||| |||||| ||||||||| |||||| |||| Sbjct 5643 ATCACTGGGGTAAAATTAACCTGTCTCACGACGGTATAAACCCAGGTCACGT----TATT 5588 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | || ||||||||| || ||| || |||||| | || | |||| ||| | | Sbjct 5587 GGCAGGCGAACAATCCGACACTTTGAGACTTCTGCGTTTCATTGTTGGGAAAAGCAGGCG 5528 Query 153 TCGAAGGATCAAAAAGCAAC 172 ||||||| ||||| ||||| Sbjct 5527 TCGAAGGGTCAAAGGGCAAC 5508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854370822240