Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20acervulina_20[genbank_20GCA_5F000499425.1_202013-11-05] 3,415 sequences; 45,830,609 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1858 659 0.0 seq2029 208 2e-51 seq800 123 8e-26 seq832 122 3e-25 seq617 104 8e-20 >seq1858 Length=3004 Score = 659 bits (730), Expect = 0.0 Identities = 468/532 (88%), Gaps = 6/532 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||||||||| Sbjct 152 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGCGTTATC 211 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||||||||||||||||||||||| ||||||| |||| | | ||||| Sbjct 212 ATTTGACAGATGTGCCGCCCCAGCCAAACTCCCAACCTGACGGTGTCTTGGGCTTGGATC 271 Query 127 GGCCCG--CGAAG--GACC-TTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTC 181 |||| || || || |||| |||||| ||| | || | || |||| |||| Sbjct 272 CTCCCGTCCGGAGACGAGAGTTAAGTCCAGAACGTGGACCTTGCGGTCCGCTTCCACTTC 331 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 || | ||||||||||||||||||| ||||||||||||||| |||| | |||||| Sbjct 332 ATCCAATAAGTAAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGCATTG-CTGCTCCC 390 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||| Sbjct 391 ACTTATTCTACACCTCTCATGTCTTTTCACAAGGTCAGACTAGAGTCAAGCTCAACAGGG 450 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| || ||| |||||||||| |||| |||||||||||||||| Sbjct 451 TCTTCTTTCCCCGCTGATTATGCAAAGTCCGTTCCCTTTGCTGCGGTTTCGCTAGATAGT 510 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 570 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 630 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 682 >seq2029 Length=3130 Score = 208 bits (230), Expect = 2e-51 Identities = 204/263 (78%), Gaps = 5/263 (2%) Strand=Plus/Minus Query 271 CAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCC 330 || ||| ||||||||| | |||| ||||||||| ||||| || ||||||| | ||||| | Sbjct 918 CACAGTTGGACTAGAGCCCAGCTGAACAGGGTCATCTTTTCCAGCTGATTTCTCCAAGAC 859 Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 || ||||| |||| || |||| ||||||||||| || | || |||| || ||| | Sbjct 858 CGCTCCCTGGGCTATGCTTTCCCTAGATAGTAG-----GAGATTGAGAATATCCTTAGTA 804 Query 391 CATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 450 |||||| || | ||| || || ||| | ||||||||| ||||||| | | | ||||| || Sbjct 803 CATTCACGCACATCATTATTTGGATTATGAGGCATTTAGCTACCTAAGGGGCGTCATGGT 744 Query 451 TACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGG 510 | | |||||| | | | || |||| | |||||| |||| ||| ||||||||||||||| Sbjct 743 TCCGCCCGCCATCAAGCGGCTCTTGACTAAATTTCATCACATTGGCATTCAGAGCACTGG 684 Query 511 GCAGAAATCACATTGCGTCAACA 533 ||||||| |||| || ||||||| Sbjct 683 GCAGAAAGCACACTGAGTCAACA 661 >seq800 Length=85734 Score = 123 bits (136), Expect = 8e-26 Identities = 127/165 (77%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 270 ACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 |||| || ||| |||||| || |||||| |||||| | ||| ||||||| ||| ||||| Sbjct 68968 ACAAGGTTGGAATAGAGTGAATCTCAACGAGGTCTTTTCTCCTCGCTGATACCGTCAAGC 69027 Query 330 CCGTTCCCTTGGCTGTGGTTTCGCTAGAT--AGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||||| |||||||||| | || | | ||| |||||||||||| || | |||| Sbjct 69028 CCGTTCTATTGGCTGTGGCTAGGCGGGGTTCAGTGGATAGGGACAGTACGAGCCGAGTTA 69087 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||| || ||| |||| ||||| || |||| || ||||||||| Sbjct 69088 ATCCAATCGTGCACGTCGTTAATTTGAGGACGGGGAATTTGGCTA 69132 >seq832 Length=82902 Score = 122 bits (134), Expect = 3e-25 Identities = 87/100 (87%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 |||||||| ||| ||||||||||||||| |||| |||||| ||||||||| ||| | Sbjct 82809 TTTTGCTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGAACACCTGCGCTATTG 82750 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC 107 ||| ||||||||||||||||||||||||| |||||||||| Sbjct 82749 TTTCACAGATGTGCCGCCCCAGCCAAACTTCCCACCTGAC 82710 >seq617 Length=29931 Score = 104 bits (114), Expect = 8e-20 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||||||||||||||| ||||| ||| || ||||||||||||||||| || ||| |||| Sbjct 3280 TAGATAGTAGATAGGGAAAGTGGAAATTTCCTTAATCCATTCATGCGCATCCCTAGTTAG 3221 Query 414 ATGACGAGGCATTTGGCTACCT 435 ||| ||| |||||||| ||||| Sbjct 3220 ATGGCGAAGCATTTGGTTACCT 3199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635144157920