Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3028 214 3e-53 seq419 210 3e-52 seq3063 120 5e-25 seq7058 114 2e-23 seq1586 84.2 3e-14 >seq3028 Length=25216 Score = 214 bits (236), Expect = 3e-53 Identities = 189/231 (82%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||| | ||||||| || || ||| |||| | ||||| |||| ||| ||||||| || Sbjct 24848 TACAAGAGACAGGGACTTATTCGGCGCAAGCT-GCTGACTTGCGCCTACAAGGAATT-CC 24905 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 ||||||||||| |||||||||||| ||||| |||| ||| ||| | ||| ||||||| Sbjct 24906 TCGTTGAAGACTAACAATTGCAATAATCTACCCCCTTCAAAATGCACCCTCACAAGATTA 24965 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | || |||||||||| | | |||| ||| || |||||||||| ||||||||| | Sbjct 24966 CCCAGCCCCCTCGGCCAAGGGAAGA-ACTCATTGCATGCATCAGTGTAACGCGCGTGCAG 25024 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||||||||||| ||||||||||||||| ||||||||||||||| || Sbjct 25025 GCCAGAACATCTAAGGACATCACAGACCTGTTGTTGCCTCAAACTTCCTTG 25075 >seq419 Length=70660 Score = 210 bits (232), Expect = 3e-52 Identities = 189/232 (81%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| | ||||||| || || || |||| | ||| | |||| ||| ||| ||||| Sbjct 28919 GTACAAGAGACAGGGACTTATTCGGGGCAAGCT-GCTGAATTGCGCCTACGAGGCATTTC 28861 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 | |||||| || ||||||||| | ||||||||||||||||| | |||| ||| || Sbjct 28860 TTT-TTGAAGGTAAATAATTGCAATAACCTATCCCCATCACGATGCACCTTCACAAGGTT 28802 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || ||||| |||||| | | |||||||| || ||||||||||||||||||||| Sbjct 28801 ACCCAGCCCCGTCGGTCAAGGTAAGA-ACTCGTTGCATGCATCAGTGTAGCGCGCGTGCG 28743 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 |||||||||||||||||||||||||||||||||||||| || |||||| || Sbjct 28742 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCTTCGGACTTCCCTG 28691 >seq3063 Length=23918 Score = 120 bits (132), Expect = 5e-25 Identities = 85/96 (89%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||| | || ||||| |||||| | | |||||| | || |||||||||||||||||| Sbjct 183 ATTACCCAGCCCCGTCGGTCAAGGTAAAA-ACTCGTGGCATGCATCAGTGTAGCGCGCGT 125 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 || ||||||||||||||||||||||||||||||||| Sbjct 124 GCAGCCCAGAACATCTAAGGGCATCACAGACCTGTT 89 >seq7058 Length=249 Score = 114 bits (126), Expect = 2e-23 Identities = 90/105 (86%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| |||||||||||| || ||| |||| | ||||| |||| ||||||| ||| | Sbjct 146 GTACAAGAGGCAGGGACGTAATCGGCGCAAGCT-GCTGACTTGCGCCTACTAGGCATT-C 203 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 105 |||||||||||| || ||||||||| ||||||||||||||||||| Sbjct 204 CTCGTTGAAGACTAATAATTGCAATAATCTATCCCCATCACGATG 248 >seq1586 Length=3397 Score = 84.2 bits (92), Expect = 3e-14 Identities = 77/95 (81%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| | ||||||| || || ||| |||| | ||||| |||| ||| ||| ||| | Sbjct 700 GTACAAGAGACAGGGACTTATTCGGCGCAAGCT-GCTGACTTGCGCCTACAAGGCATT-C 757 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC 95 |||||||||||| || ||||||||| ||||||||| Sbjct 758 CTCGTTGAAGACTAATAATTGCAATAATCTATCCC 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751937531125