Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1586 96.9 2e-18 seq8272 91.5 8e-17 seq419 78.8 5e-13 >seq1586 Length=3397 Score = 96.9 bits (106), Expect = 2e-18 Identities = 92/116 (79%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAA-CATCGCC 59 ||||||| ||||||||||||||| | |||||| | || ||| | || ||| || Sbjct 1101 GAACCCAGAGACTTTGATTTCTCATGAGGTGCAGGAGAAGCCAA---GGTAGGCATTTCC 1157 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 | ||| ||||||||||||||||| ||| ||| ||||||||||||| ||||||||| Sbjct 1158 CTATCTCTAGTCGGCATAGTTTATGGTAGAGATTACGACGGTATCTAATCGTCTTC 1213 >seq8272 Length=22376 Score = 91.5 bits (100), Expect = 8e-17 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAA-CATCGCC 59 ||||||| |||| |||||||||| | |||||| | || ||| | || ||| || Sbjct 15766 GAACCCAGAGACGTTGATTTCTCATGAGGTGCAGGAGAAGCCAA---GGTAGGCATTTCC 15710 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 | ||| ||||||||||||||||| ||| ||| ||||||||||||| ||||||||| Sbjct 15709 CTATCTCTAGTCGGCATAGTTTATGGTAGAGATTACGACGGTATCTAATCGTCTTC 15654 >seq419 Length=70660 Score = 78.8 bits (86), Expect = 5e-13 Identities = 88/116 (76%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAA-CATCGCC 59 ||||||| |||||||||||| || | || || | || ||| | || ||| || Sbjct 28391 GAACCCAGAGACTTTGATTTGTCATGAGAGGCAGGAGAAGCCAA---GGTAGGCATTTCC 28335 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 | ||| ||||||||||||||||| ||| || ||||||||||||| ||||||||| Sbjct 28334 CTATCTCTAGTCGGCATAGTTTATGGTAGAGGTTACGACGGTATCTAATCGTCTTC 28279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278377619250