Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1586 248 2e-63 seq419 192 1e-46 seq8272 116 7e-24 seq285 105 1e-20 >seq1586 Length=3397 Score = 248 bits (274), Expect = 2e-63 Identities = 209/250 (84%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTC-GAATACATTAGC 128 ||||||||||||| |||| ||||||||| |||||||| | | || | |||||| ||| Sbjct 1464 ACTTTTACTTTGAGAAAAATAGAGTGTTTCAAGCAGGCTTGTCGCCCTGAATACTGCAGC 1405 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 ||||||||||| ||||||| | ||||||| |||||||||||||||||| | ||| || Sbjct 1404 ATGGAATAATAAGATAGGACCT-CGGTTCTTTTTTGTTGGTTTCTAGGAACAAGGTAGTG 1346 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| ||||| | ||||| || ||||||||||||||||||| ||||| Sbjct 1345 ATTAATAGGGACAGTTGGGGGCATTCGTATTTAACTGTCAGAGGTGAAATTCTTAGATTT 1286 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || ||||| ||||||||||||||| || |||||||||||||||||||||| |||||| Sbjct 1285 GTTAAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGA 1227 Query 309 AAGTTAGGGG 318 || |||||| Sbjct 1226 CAG-TAGGGG 1218 >seq419 Length=70660 Score = 192 bits (212), Expect = 1e-46 Identities = 194/246 (79%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 69 GGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTC-GAATACATTA 126 ||||||||||||||| |||| ||| || || |||||||| | |||| | |||||| | Sbjct 28028 GGACTTTTACTTTGAGAAAAATAGGGTTTTTCAAGCAGGCTTGTTGCCCTGAATACTGCA 28087 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAA 186 ||||||||||||| ||||||| | ||||| |||| |||||||||||||||| |||| Sbjct 28088 GCATGGAATAATAAGATAGGACCT-CGGTTATATT--GTTGGTTTCTAGGACCAAGGTAA 28144 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||||||| ||| ||||| | ||||| | || || | ||||||||||||| | Sbjct 28145 TGATTAATAGGTGCAGTTGGGGGCATTCGTATTTAGCTGACAAATGTGAAATTCTTGGTT 28204 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 || | |||| ||||||||||||||| || |||| |||||||||||||| | |||| Sbjct 28205 TTGCTAGAGACGAACTACTGCGAAAGCATTTGCCAAAAATGTTTTCATTAATTA-AGAAC 28263 Query 307 GAAAGT 312 || ||| Sbjct 28264 GACAGT 28269 >seq8272 Length=22376 Score = 116 bits (128), Expect = 7e-24 Identities = 86/98 (88%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 221 AATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACC 280 || ||||||||||||||||||| ||||| || ||||| ||||||||||||||| || || Sbjct 15554 AACTGTCAGAGGTGAAATTCTTAGATTTGTTAAAGACGAACTACTGCGAAAGCATTTGCC 15613 Query 281 AAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||| |||||| || |||||| Sbjct 15614 AAGGATGTTTTCATTAATCA-AGAACGACAG-TAGGGG 15649 >seq285 Length=14561 Score = 105 bits (116), Expect = 1e-20 Identities = 90/109 (83%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG--CTCGAATACATTAGC 128 ||||||||||| | |||| ||||||||| |||||||| | || | |||||| ||| Sbjct 14449 ACTTTTACTTTAAGAAAAATAGAGTGTTTCAAGCAGGCTTGTGGCCCTGAATACTGCAGC 14508 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA 177 ||||||||||| ||||||| | ||||||| |||||||||||||||||| Sbjct 14509 ATGGAATAATAAGATAGGACCT-CGGTTCTTTTTTGTTGGTTTCTAGGA 14556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915121521600