Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3028 178 5e-42 seq419 170 8e-40 seq4386 159 1e-36 seq2148 159 1e-36 seq1732 150 7e-34 seq3384 149 3e-33 seq1364 131 7e-28 seq4139 123 1e-25 seq936 123 1e-25 seq7889 100 1e-18 seq2513 87.8 7e-15 seq2184 82.4 3e-13 seq2995 75.2 5e-11 >seq3028 Length=25216 Score = 178 bits (196), Expect = 5e-42 Identities = 222/300 (74%), Gaps = 11/300 (4%) Strand=Plus/Minus Query 392 TAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGT 451 ||| |||| || || |||| |||| ||||||||||||||||| |||||||| |||||| Sbjct 22906 TAACGGTTTCAACCGACCCGCCTTGAAACACGGACCAAGGAGTATAACATCTTGGCGAGT 22847 Query 452 GTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCG--TGAGG 509 | ||||| || || | || |||||||||||| | ||| | || | || || Sbjct 22846 ATGCGGGTGGAAACCCTCTATGCATAATGAAAGTGAGAGTAGGGAGAAATTTGCCTGTGG 22787 Query 510 G------TGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGC 563 ||| || ||||||| | || ||| | | | ||||||| |||| | | Sbjct 22786 CATTTTTTGCGCCTACGACCGACCACGAACTCTGTGAAAAG-TTTGAGTTGTAGCACATC 22728 Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||||||||| | ||||||||||| |||||||||| ||| |||| ||| Sbjct 22727 TGTTAGGACCCGAAAGATGG-GCACTATGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTG 22669 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| ||||| |||| | ||| ||||||||||| |||||||| | ||||||||||||| Sbjct 22668 ATGGAAGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCAAA-CTCGGTATAGGGGCGA 22610 Score = 156 bits (172), Expect = 2e-35 Identities = 136/168 (81%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | ||| |||| ||||||||||| Sbjct 23348 GAGTCGCGTTCATTGGGACTTGAGCGCAAAATGTGCGATAAGTTTCACATAAAGCTAAAT 23289 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 23288 ACTGGCGTGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTTGGAA 23229 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| ||||| | |||||||| || |||||||||| ||| ||| Sbjct 23228 AGAGAGTT-AAAAGTGCCTGAAATTGCTGGAAGGGAAGCGATTGAAAC 23182 >seq419 Length=70660 Score = 170 bits (188), Expect = 8e-40 Identities = 219/300 (73%), Gaps = 9/300 (3%) Strand=Plus/Plus Query 392 TAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGT 451 ||| |||| || || ||||||||| || |||| ||| |||||||||||||| ||||||| Sbjct 30754 TAACGGTTTCAACCGACCCGTCTTGAAAGACGGGCCAGGGAGTCTAACATCTGTGCGAGT 30813 Query 452 GTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACG------GAGGTGGGAACCCGT 505 | ||||| || ||||| || ||| | |||| | | ||||| | ||| Sbjct 30814 ATGCGGGTGGAAACCCCGTATGCATAACGGAAGTTAGAGTAGGGAGAGGTTTGCCTCCGG 30873 Query 506 GAGGGT--GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGC 563 | | ||||| |||| || | || ||| | || ||||||| |||| | | Sbjct 30874 CATTTTTCGCACCTACGACAGACCACGAACTCTGTGAGAGG-TTTGAGTTGTAGCACACC 30932 Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||| |||||||||||||||||| |||||||||| ||| |||| ||| Sbjct 30933 TGTTAGGACCTGAAATATGGTGAACTATGCCTGAGTAGGGTGAAGTCAGGTGAAAGCCTG 30992 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||| |||| | ||| |||||| |||| |||||||| |||||||||||| ||| Sbjct 30993 ACGGAAGCTCGTAGCGATACTGACGTGCATATCGTTCGTCAAACTTGGGTATAGGGTCGA 31052 Score = 104 bits (114), Expect = 1e-19 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAA-A 98 |||||| ||| |||||| | ||| | ||||| | | ||| |||| | || | | Sbjct 30313 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATAAGTTTCAAATTAAAAAAGGA 30372 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| ||||||||||||| |||| | ||| ||||||||||||| |||| ||| Sbjct 30373 TACTGGCGTGAGACCGATAGCGAACAACTGCTATGAAGGAAAGATGAAAAGGACTTCGGA 30432 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||| |||||||| || |||||||||| ||| ||| Sbjct 30433 AAGAGAGTT-AAAAGTGTCTGAAATTGCTGGAAGGGAAGCGATTGAAAC 30480 >seq4386 Length=1472 Score = 159 bits (176), Expect = 1e-36 Identities = 137/168 (82%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | ||| |||| ||||||||||| Sbjct 1002 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATAAGTTTCACATAAAGCTAAAT 1061 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 1062 ACTGGCGTGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTTGGAA 1121 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| ||||| | |||||||| ||||||||||||| ||| ||| Sbjct 1122 AGAGAGTT-AAAAGTGCCTGAAATTGCTGAAAGGGAAGCGATTGAAAC 1168 >seq2148 Length=1358 Score = 159 bits (176), Expect = 1e-36 Identities = 118/138 (86%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||||||| |||| | ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 54 TTTGAGTTGTAGCACATCTGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTG 113 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||| ||| |||| ||| |||| ||||| |||| | ||| ||||||||||| ||||||| Sbjct 114 AAGTCAGGCGAAAGCCTGATGGAAGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCAA 173 Query 666 ATTTGGGTATAGGGGCGA 683 | |||||||||||||||| Sbjct 174 ACTTGGGTATAGGGGCGA 191 >seq1732 Length=2877 Score = 150 bits (166), Expect = 7e-34 Identities = 135/168 (80%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | ||| |||||| | ||| | ||||| | | ||| |||| ||||||||||| Sbjct 1971 GAGTTGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATAAGTTTCACATAAAGCTAAAT 2030 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 2031 ACTGGCGTGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGGACTTTGGAA 2090 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||| ||||| | |||||||| |||||||||||| ||| ||| Sbjct 2091 AGAGAGTT-AAAAGTGCCTGAAATTGCTGAAAGGGAAGCAATTGGAAC 2137 >seq3384 Length=11057 Score = 149 bits (164), Expect = 3e-33 Identities = 219/307 (71%), Gaps = 10/307 (3%) Strand=Plus/Plus Query 382 GATGCTGGCG-TAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||| | ||| |||| || ||||||||||| ||||||||||||| |||||||| Sbjct 9770 GATGCTGTCCCTAACGGTTTCAACGGGCCCGTCTTGAAACACGGACCAAGTGGTCTAACA 9829 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAA 500 | | ||||||| ||| | || | || | | |||||| || | ||| | | Sbjct 9830 TTTGTGCGAGTACGCGGGAGGAAACACTGTATCCACAGTGAAAGAGAGGGTAGGGAGAGA 9889 Query 501 C------CCGTGAGGGT--GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552 ||| || | ||||| ||||||||| || ||| | | || ||||||| Sbjct 9890 TTTGCCTCCGGGAATTTTCGCACCTGCGACCGATCACGAACTCTATGAAAGG-TTTGAGT 9948 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||| | ||| ||| ||| |||| |||||||||||||||| |||||||||| ||| Sbjct 9949 TGTAGCACATTTGTCAGGATCCGGAAGACGGTGAACTATGCCTGAGTAGGGTGAAGTCAG 10008 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||| ||| |||||||||| ||| | || ||||||||||| |||||||| ||||| Sbjct 10009 GCGAAAGCCTGATGGAGGCTCGTAGCTATATTGACGTGCAAATCGTTCGTCAAACTTGGG 10068 Query 673 TATAGGG 679 |||||| Sbjct 10069 AATAGGG 10075 >seq1364 Length=4721 Score = 131 bits (144), Expect = 7e-28 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 ||||||||| |||| | ||||| ||||| || | ||||||||||||| |||| |||| Sbjct 933 GATTTGAGTTGTAGCACATCTGTTAGGACCAGATATATGGTGAACTATGACTGAGTAGGA 992 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||| ||| |||| ||| |||| ||||| |||| | || ||||||||||| ||||| Sbjct 993 TGAAGTCAGGCGAAAGCCTGATGGAAGCTCGTAGCGATAGTGACGTGCAAATCGTTCGTC 1052 Query 664 AAATTTGGGTATAGGGGCGA 683 ||| |||||||||| ||||| Sbjct 1053 AAACTTGGGTATAGAGGCGA 1072 >seq4139 Length=2057 Score = 123 bits (136), Expect = 1e-25 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| | ||||| ||||||||||||||||| |||| |||| | |||||||||| ||| Sbjct 1152 AGCACATCTGTTAGGACCCGAAAGATGGTGGACTACGCCTAAGTAGGGTGAAGTCAGGCA 1211 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||| ||| |||| ||||| || | ||| ||||||||||| |||| ||| |||||||| Sbjct 1212 AAAGCCTGATGGAAGCTCGTCACGATACTGACGTGCAAATCGTTCGTGAAACTTGGGTAT 1271 Query 676 AGGGGCGA 683 |||||||| Sbjct 1272 AGGGGCGA 1279 >seq936 Length=60611 Score = 123 bits (136), Expect = 1e-25 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 ||||||||||||||||||| |||||||| || || ||||||| ||| |||| ||| | Sbjct 8239 TTGGGACCCGAAAGATGGTTAACTATGCTTGGGTAAGGTGAAGTCAGGCGAAAGCCTGCT 8298 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| | ||| |||| | ||| ||||||||||| |||||||| |||||||||||||| Sbjct 8299 GGAAGATCGTAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGC 8354 >seq7889 Length=23262 Score = 100 bits (110), Expect = 1e-18 Identities = 113/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 |||||| | ||| | ||| || | ||| |||| ||||||| |||| |||| |||| Sbjct 13409 TTGGGATTTAAGCGCAAAAGAGGGGATAAGTTTCACGTAAAGCTGAATACTGGCGTGAGA 13350 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 || ||||| | ||| || |||| || |||||||| ||||||||||||| | ||| Sbjct 13349 CCAATAGCAAAGAAGGAGTGTGAGGGAGCCATGAAAAGAACTTTGGAAAGAG---TTAAA 13293 Query 172 AGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 | || |||||||| ||||||||||||| || Sbjct 13292 ATTACCTGAAATTGCTGAAAGGGAAGCGATT 13262 >seq2513 Length=35989 Score = 87.8 bits (96), Expect = 7e-15 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||| || ||||||| ||||||||||||| || |||||| ||| |||| ||| | Sbjct 21264 TTAGGACACGGAAGATGGGGAACTATGCCTGAGGAGCGTGAAGTCAGGAGAAA-GCTGAT 21322 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | ||| || | | ||| |||||||||| | |||||| ||| || ||||||||| Sbjct 21323 GGGAGTTCGTAGGGATACTGAAGTGCAAATCGGTTGTCAAACTTGAGTGTAGGGGCGA 21380 >seq2184 Length=40405 Score = 82.4 bits (90), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 62 AGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGC 121 ||| | ||||| | ||||| ||| ||||||||||||||||| | ||||||||| | Sbjct 31592 AGCGCAAAATGCGTGGTAAGTTTAGCATAAAGCTAAATATTGGCGTGGGACCGATAGGGA 31651 Query 122 ACAAGTAGAGTGATCG-AAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGA 180 | ||| | || | ||| | | |||| ||||||||||||||||| ||||| | ||| Sbjct 31652 AAAAGCGCTGGGAAGGCAAAAAAGGAAAGGACTTTGGAAAGAGAGTT-AAAAGTATCTGA 31710 Query 181 AATTGTTGAAAGGGAAGCGCTTGCAAC 207 | ||| |||| |||| | ||| ||| Sbjct 31711 AGTTGGTGAAGCGGAAATGATTGAAAC 31737 >seq2995 Length=26224 Score = 75.2 bits (82), Expect = 5e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| | || ||||| ||| ||||||| || || ||||||||| ||| ||||| || Sbjct 999 GTTAGAACGCGAAAAATGTTGAACTAAGCGGGAGTAGGGTGAACTCAGGGGAAAGCCTAA 1058 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 |||| ||||||||| | || ||||||||||| ||||||| Sbjct 1059 TGGACGCTCGCAGCCATA-TGACGTGCAAATCGCTCGTCAA 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079816066250