Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2897 141 2e-31 seq3530 102 2e-19 >seq2897 Length=29064 Score = 141 bits (156), Expect = 2e-31 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||||||||| ||| | ||||||| || ||| ||||||| | ||||||| Sbjct 25078 ATCTTCACAGACATTCCTATTTCACCGAATCTTTCTCCAAGACAGCATCCAAGTCGTTAC 25137 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 || ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 25138 ACCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 25197 Query 135 GTTACGGCCGCCGTTTACCGGGGCTT 160 ||||| |||||||||||| || |||| Sbjct 25198 GTTACAGCCGCCGTTTACTGGAGCTT 25223 >seq3530 Length=6259 Score = 102 bits (112), Expect = 2e-19 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||| |||||| ||||| |||||||||||||||||| |||||||| |||| Sbjct 1744 TCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTGGAC 1685 Query 128 CGTTATTGTTACGGCCGCCGTTTACC 153 ||| | |||| ||||||||||||| Sbjct 1684 CGTCA-GATTACAGCCGCCGTTTACC 1660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260691886400