Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2897 237 3e-60 seq7937 123 5e-26 seq3530 96.9 7e-18 >seq2897 Length=29064 Score = 237 bits (262), Expect = 3e-60 Identities = 265/352 (75%), Gaps = 19/352 (5%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | ||| | |||||||||| ||| | |||||| |||| ||||||| Sbjct 25078 ATCTTCACAGACATTCCTATTTCACCGAATCTTTCTCCAAGACAGCATCCAAGTCGTTAC 25137 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 25138 ACCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 25197 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGA----- 183 ||||| ||||||||||||||| |||| | | | ||| ||| || | | Sbjct 25198 GTTACAGCCGCCGTTTACTGGAGCTT-ATAAAAATACTTATATT----AAAAATATTTTT 25252 Query 184 ---TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||||| | ||||||| ||||||| |||||| || ||||| | | | | Sbjct 25253 TTNTTTTTTTAACTTACCAGCACTGGGCAGGTGTCAGCCCCCTTACATTATAATCAAATT 25312 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 |||| || || |||||||||| ||||||||||||||| || ||| ||| ||| | | Sbjct 25313 TAGCGGAGACTTGTGTTTTTGATAAACAGTCGCTTGGATCTTTTCATTGCAGCC---CTT 25369 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | |||| || ||||||| ||||||| || | |||||||||||||||||| Sbjct 25370 TG---GGCATCCTTTCTCCCGAAGTTACAGGATTATTTTGCCGAGTTCCTTA 25418 >seq7937 Length=213 Score = 123 bits (136), Expect = 5e-26 Identities = 100/121 (83%), Gaps = 5/121 (4%) Strand=Plus/Minus Query 249 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA-----TAGA 303 ||||||||||||| |||||||| | |||||||||||| ||||||| || | | Sbjct 212 ACCTGTGTTTTTGATAAACAGTTGTTTGGGCCTATTCACTGCGGCTAACCAATCTCTTGG 153 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCT 363 | ||||||||||| || ||||||||||||||||||||||||||||||||| | |||||| Sbjct 152 CTAGCACCCCTTCTTCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCT 93 Query 364 C 364 | Sbjct 92 C 92 >seq3530 Length=6259 Score = 96.9 bits (106), Expect = 7e-18 Identities = 75/88 (85%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || ||||| |||||||||||||||||| |||||||| | Sbjct 1747 AAGTCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATTTTGCTACCTTTG 1688 Query 119 GACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||| | | |||| |||||||||||| Sbjct 1687 GACCGTCAGA-TTACAGCCGCCGTTTAC 1661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062308899200