Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2897 210 7e-52 seq3058 141 3e-31 seq5958 122 3e-25 >seq2897 Length=29064 Score = 210 bits (232), Expect = 7e-52 Identities = 271/366 (74%), Gaps = 20/366 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 28194 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCTCGCACAAGCGGTGGAGCAT 28253 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 || |||||||||| | ||||||||||||||||||| | ||||| || | || | Sbjct 28254 GTAATTTAATTCGATGTAACGCGAAGAACCTTACCAGAGCTTGAAAT-ATATGTTC---T 28309 Query 121 TAGAGAT---AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177 || | || | | |||| || ||| | ||||| | ||||||| |||||| Sbjct 28310 TAAAAATTTAATAAGTTT---TTTATAAATACAAA--TACAGGAGGTGCATGGCTGTCGT 28364 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 |||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| Sbjct 28365 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCTGCAACGAGCGTAACCCTTATTTAAAGT 28424 Query 238 T-GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGG 296 | ||| |||| || || || | | | | | || ||||||||| Sbjct 28425 TAAATATCTTTAAAGACTGC-CTATA---TTATTATATATAATAA---GGAGGAAGGAAT 28477 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| |||||||| || |||||||| ||||| | ||||||| ||||||||||||||| Sbjct 28478 GGAAGACGTCAAGTCCTCATGCCCTTTATGCTCTGGGCTATTTACGTGCTACAATGGATG 28537 Query 357 ATACAA 362 ||||| Sbjct 28538 GTACAA 28543 >seq3058 Length=24065 Score = 141 bits (156), Expect = 3e-31 Identities = 172/232 (74%), Gaps = 12/232 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||| | |||||||||||||||||||||||| | ||||||||| ||||||||| Sbjct 10522 TACGCTCGCAGGAGTGAAACTCAAAGGAATTGACGGGGGCTCGCACAAGCAGTGGAGCAT 10581 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 || |||||||||| | | ||||||||||||||||| | ||||| || | || | Sbjct 10582 GTAATTTAATTCGATGTACCGCGAAGAACCTTACCAGACCTTGAAAT-ATATGTTC---T 10637 Query 121 TAGAGAT---AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177 || | || | | ||| ||| | | | ||| | ||||||| || || Sbjct 10638 TAAAAATTTAATAAGTT-----TTCTATATATACAAATACACGATGTGCATGGCTGGCGC 10692 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTA 229 |||||||| ||||||||||||||||||||||| ||| | |||| ||||| || Sbjct 10693 CAGCTCGTCTCGTGAGATGTTGGGTTAAGTCCTGCACCCAGCGTAACCCCTA 10744 >seq5958 Length=347 Score = 122 bits (134), Expect = 3e-25 Identities = 82/92 (89%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 405 TTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 ||||||||||||| || |||||||||||||||| | ||||||||||||||||||||||| Sbjct 347 TTCTCAGTTCGGACTGCAGTCTGCAACTCGACTGCACGAAGCTGGAATCGCTAGTAATCG 288 Query 465 TAGATCAGCATGCTACGGTGAATACGTTCCCG 496 |||||||| || ||||||||||||||||| Sbjct 287 CGGATCAGCACGCCGCGGTGAATACGTTCCCG 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503871032000