Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq419 269 4e-70 seq3028 233 3e-59 seq1586 134 2e-29 seq3063 91.5 2e-16 >seq419 Length=70660 Score = 269 bits (298), Expect = 4e-70 Identities = 214/257 (83%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28775 ACTCGTTGCATGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 28716 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||| || |||||| | | | || | | |||||||||||||||| | | Sbjct 28715 CCTGTTATTGCTTCGGACTTCCCTGCGTTAGACACTCAAAGTCCCTCTAAGAAGCGATGC 28656 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| ||| | || ||||||||| ||||||||||||||||||| |||||| Sbjct 28655 GGTGACCGAGGTCACCGACCCTGTTTAGCAGGCCAAGGTCTCGTTCGTTATCGAAATTAA 28596 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 28595 CCAGACAGATCTCCCCACCAACTAAGAACGGCCATGCACCACCACCCGTAGAATCAAGAA 28536 Query 242 AGAGCTATCAATCTGTC 258 |||||||||||||||| Sbjct 28535 GGAGCTATCAATCTGTC 28519 >seq3028 Length=25216 Score = 233 bits (258), Expect = 3e-59 Identities = 179/212 (84%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||| ||||||||| | ||||||||||||||| ||||||||||||||| ||||||| Sbjct 25005 TCAGTGTAACGCGCGTGCAGGCCAGAACATCTAAGGACATCACAGACCTGTTGTTGCCTC 25064 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 |||||||| | | | || | | |||||||||||||||| | | ||||| |||| Sbjct 25065 AAACTTCCTTGCGTTAGACACGCAAAGTCCCTCTAAGAAGCGATACGGTAACCAAAGTCA 25124 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 | |||||||||||| | ||||||||||||||||| ||||||||||||| |||||| Sbjct 25125 CCGACCCTATTTAGCAGGCCAGGGTCTCGTTCGTTATCGAAATTAACCAGACAGATCACT 25184 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACC 227 |||||||||||||||||||||||||||||||| Sbjct 25185 CCACCAACTAAGAACGGCCATGCACCACCACC 25216 >seq1586 Length=3397 Score = 134 bits (148), Expect = 2e-29 Identities = 76/77 (99%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 CCAGACAGATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 951 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 952 AGAGCTATCAATCTGTC 968 >seq3063 Length=23918 Score = 91.5 bits (100), Expect = 2e-16 Identities = 62/67 (93%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGC-TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| |||| | | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 154 ACTCG-TGGCATGCATCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAG 96 Query 61 ACCTGTT 67 ||||||| Sbjct 95 ACCTGTT 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796733809575