Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3021 334 1e-89 seq3028 313 4e-83 seq1 280 3e-73 seq509 250 4e-64 seq419 248 1e-63 seq4462 190 3e-46 seq2827 172 9e-41 seq400 165 1e-38 seq2016 141 2e-31 seq200 138 2e-30 seq1608 123 4e-26 seq3758 109 9e-22 seq2989 96.9 6e-18 seq2897 78.8 2e-12 >seq3021 Length=96511 Score = 334 bits (370), Expect = 1e-89 Identities = 230/260 (88%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 75613 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 75672 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| || ||| || |||||| || ||||||||||||||||||| Sbjct 75673 GGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCTCAATGATAGGAAGAGCCGACA 75732 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 75733 TCGAAGGATCAAAAAGCAACGTGACTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 75792 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 || |||||||||||| |||||||||| || |||| | |||||||||||||||||| Sbjct 75793 GTTGTAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGACCTAAAGGATCGATAGGCC 75852 Query 273 ACACTTTCATGGTTTGTATT 292 | |||||| ||||||||| Sbjct 75853 ATGCTTTCACAGTTTGTATT 75872 >seq3028 Length=25216 Score = 313 bits (346), Expect = 4e-83 Identities = 226/261 (87%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 20545 ATCAGTAGGACAAAACTAACCTGTCTCACGAAGGTCTAAACCCAGCTCACGTTCCCTATT 20604 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| || ||| || |||||| ||| ||||||||||||||||||| Sbjct 20605 GGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCGCAATGATAGGAAGAGCCGACA 20664 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 20665 TCGAAGGATCGAAAAGCAACGTCGCTATGAACGATTGGCTGCCACAAGCCAGTTATCCCC 20724 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||| ||||| || | || | |||| ||||||||||||| Sbjct 20725 GTGGTAACTTTTCTGACACCACTAGCTGAAAGTCTCTCAGACCTAAGGGATCGATAGGCC 20784 Query 273 ACACTTTCATGGTTTGTATTC 293 | |||||| |||||||||| Sbjct 20785 ATGCTTTCACAGTTTGTATTC 20805 >seq1 Length=242787 Score = 280 bits (310), Expect = 3e-73 Identities = 185/205 (90%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 51536 ATCAGTAGGGTAAAGCTAACCTGTCTCACGACGGTCTAAACCCAGCTCAGGTTCCCTATT 51477 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | |||||||| |||| || ||| || |||||| || |||||||||||||||||| Sbjct 51476 GGCGGGTGAACGATCCGACACTTTGAGACTTCTGCGTCTCAGTGATAGGAAGAGCCGACA 51417 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 51416 TCGAAGGATCAAAATGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAATTATCCCT 51357 Query 213 GTGGTAACTTTTCTGGCACCTCTAG 237 ||||||||||||||| ||||||||| Sbjct 51356 GTGGTAACTTTTCTGACACCTCTAG 51332 >seq509 Length=68321 Score = 250 bits (276), Expect = 4e-64 Identities = 211/257 (82%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 5975 ATCAGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAGGTTCCCTATA 5916 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | |||| |||||||| || ||| || |||| | ||| ||||| ||||||| |||| Sbjct 5915 GGCGGGTAAACAATCCGACACTTTGAGACTTCTCCGTCGCAGTGATACGAAGAGCAGACA 5856 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 | ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| ||| Sbjct 5855 TTGAAGGATCAAAAACCAACGTCGCTATGAAAGCTTGGCTGCCGCAAGCCAGTTATGCCT 5796 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC-TAAAGGATCGATAGGC 271 | || || |||||| ||||||||| || || || ||| ||||||||| | ||| Sbjct 5795 GAGGCGACGTTTCTGACACCTCTAG-CTGAAGGTTACTCAGACGTAAAGGATCTACAGGT 5737 Query 272 CACACTTTCATGGTTTG 288 || ||||||| ||||| Sbjct 5736 CATACTTTCACAGTTTG 5720 >seq419 Length=70660 Score = 248 bits (274), Expect = 1e-63 Identities = 175/200 (88%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||| |||||||||||||||||| |||||||| |||||||||| ||||| ||||| Sbjct 36068 ATCAGTAGGATAAAACTAACCTGTCTCACGACGGTCTGAACCCAGCTCGCGTTCACTATT 36009 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | |||||||||||||||| ||| || |||||| || |||||||||||||| || Sbjct 36008 GGCGGGTGAACAATCCAACACTTTGAGACTTCTGCGTCCCAGCGATAGGAAGAGCCGGCA 35949 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 35948 TCGAAGGATCAAAATGCAACGTCGCTATGAACGGTTGGCTGCCACAAGCCAGCTATCCCT 35889 Query 213 GTGGTAACTTTTCTGGCACC 232 || |||| ||||||| |||| Sbjct 35888 GTAGTAAGTTTTCTGACACC 35869 >seq4462 Length=1326 Score = 190 bits (210), Expect = 3e-46 Identities = 134/153 (88%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |||| Sbjct 500 GAAGAGTCGACATCGAAGGATCCAAAAGCAACGTCGCTATGAACGCTTGGTTGCCGCAAG 441 Query 201 CCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAG 260 ||||||||||||||||||||||| | |||||||||| || |||| | | |||||| Sbjct 440 CCAGTTATCCCTGTGGTAACTTTCCCTACACCTCTAGCTGAAAGTTTCTAAGACCTAAAG 381 Query 261 GATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||||||| |||||| |||||||||| Sbjct 380 GATCGATAGGCCACGCTTTCACAGTTTGTATTC 348 >seq2827 Length=32467 Score = 172 bits (190), Expect = 9e-41 Identities = 122/139 (88%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 31623 ATCAGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 31564 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | || | ||||||| || ||| || |||||| || ||||||||||||||||||| Sbjct 31563 GGCGG--GNACAATCCGACACTTTGAGACTTCTGCGTCTCAATGATAGGAAGAGCCGACA 31506 Query 153 TCGAAGGATCAAAAAGCAA 171 ||||||||||||||||||| Sbjct 31505 TCGAAGGATCAAAAAGCAA 31487 >seq400 Length=149713 Score = 165 bits (182), Expect = 1e-38 Identities = 119/137 (87%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 80 CACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATA 139 |||||||||||| | ||||||||||||| || ||| || |||||| || |||||| Sbjct 66013 CACGTTCCCTATCGGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCTCAATGATA 65954 Query 140 GGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 |||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| Sbjct 65953 GGAAGAGCCGACATCGAAGGATTAAAA---AACGCCGCTATGAACGCTTGGCTGCCACAA 65897 Query 200 GCCAGTTATCCCTGTGG 216 ||||||||||||||||| Sbjct 65896 GCCAGTTATCCCTGTGG 65880 >seq2016 Length=114970 Score = 141 bits (156), Expect = 2e-31 Identities = 190/261 (73%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||| || | |||||||||||||| |||||| ||||||| ||| |||| |||||||||| Sbjct 17552 ATCACTACAGAAAAACTAACCTGTCCCATGACAGTCTAAAACCACCTCA-GTTCCCTATT 17494 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||| || ||| | | ||| |||||| | | |||||| || | | || Sbjct 17493 GTCGGGGGAGCAACCTGGCACTTTGATGCTTCTGCGT-GCACTGATAGAGGGAACTGGCA 17435 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||| ||| | ||| ||||||||||||||||||| ||| |||||||||| Sbjct 17434 CCGAAGGATCAAAACGCACAGCCGCCATGAACGCTTGGCTGCCACTAGCGAGTTATCCCT 17375 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||| | || |||| ||||||||| | |||| |||||| | ||| ||||| Sbjct 17374 GTGCCAGCTCTTCTAACACCTCTAGATGAAGGTTTC--ATACCTAAAGAAACGAGAGGCC 17317 Query 273 ACACTTTCATGGTTTGTATTC 293 | | ||| |||||||||| Sbjct 17316 ATGCCCTCACAGTTTGTATTC 17296 >seq200 Length=15792 Score = 138 bits (152), Expect = 2e-30 Identities = 110/130 (85%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||||| ||||| ||| ||||||||||||||||||||||| | |||||||||||||||| Sbjct 12798 AAAGCAAAGTCGCAATGGACGCTTGGCTGCCACAAGCCAGTCACCCCTGTGGTAACTTTT 12857 Query 225 CTGGCACCTCTAGCCTCAAATTTC-GAGGGACTAAAGGATCGATAGGCCACACTTTCATG 283 ||| |||||||||| || |||| || | | ||||||||| ||||||| ||||| | | Sbjct 12858 CTGACACCTCTAGCTGAAAGTTTCTCAGAGGC-AAAGGATCGTTAGGCCATACTTTTACG 12916 Query 284 GTTTGTATTC 293 |||| ||||| Sbjct 12917 GTTTTTATTC 12926 >seq1608 Length=49376 Score = 123 bits (136), Expect = 4e-26 Identities = 185/260 (71%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||||||| |||||| |||| |||||||| | | ||||| | ||| |||||| || | Sbjct 13229 CAGTAGGATAAAACAAACCGGTCTCATGGCAGGTTAAACAGAAGTCAAGTTCCCCGTTTG 13170 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 | ||| || ||||| | || || |||||| | |||||||| ||||||| || Sbjct 13169 TTGGTTAATAATCCGGCATTTTGAGACTTCTGCGTTTCATTGATAGGAGGAGCCGATATT 13110 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 || | |||| |||| | || |||||| |||||||||||||| ||||||| ||| Sbjct 13109 AAATAACCAAACTGCAATTTTGCCATGAACCCTTGGCTGCCACAACACAGTTATGTCTGC 13050 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC-GAGGGACTAAAGGATCGATAGGCCA 273 || || | ||||| ||||||||| | |||| || | || | ||||| ||||| | Sbjct 13049 GGCAATTCCTCTGGTACCTCTAGCTAAACGTTTCTCAGACATTATA-GATCGTTAGGCGA 12991 Query 274 CACTTTCATGGTTTGTATTC 293 | |||| |||||||||| Sbjct 12990 GGCCTTCACCGTTTGTATTC 12971 >seq3758 Length=3706 Score = 109 bits (120), Expect = 9e-22 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 176 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3637 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCT 3696 Query 236 AGC 238 ||| Sbjct 3697 AGC 3699 >seq2989 Length=170720 Score = 96.9 bits (106), Expect = 6e-18 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| Sbjct 14249 AGCAACGTCGCTATGAACGCTTGGCTGCCATGAGCCAGGTATCCCACTGGTAACTTTTCT 14308 Query 227 GGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264 | | || | ||| | |||| || |||||||||| Sbjct 14309 GACCCCCCCAGCTGAACGTTTCTCAGGCCTAAAGGATC 14346 >seq2897 Length=29064 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 24524 CTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCAACC 24583 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || || | ||| || ||||||||||||| | ||| | Sbjct 24584 CTTGAGACCTACTTCAGCCTC---AGGATGCGACGAGCCGACATCGAGGTGCCAACCCTC 24640 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 |||| || |||| | || | | |||| ||||||||| ||||||||| Sbjct 24641 CCCGTCAATAGGAACTTTCGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 24695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854326735200