Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1586 141 1e-31 seq419 120 3e-25 seq285 91.5 2e-16 >seq1586 Length=3397 Score = 141 bits (156), Expect = 1e-31 Identities = 145/184 (79%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT-GCTC-GAATACATTACC 67 ||||||||||||| |||| ||||| ||| |||||||| | | || | |||||| | | Sbjct 1464 ACTTTTACTTTGAGAAAAATAGAGTGTTTCAAGCAGGCTTGTCGCCCTGAATACTGCAGC 1405 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 ||||||||||| ||||||| | ||||||| |||||| ||||||||||| | ||| | Sbjct 1404 ATGGAATAATAAGATAGGACCT-CGGTTCTTTTTTGTTGGTTTCTAGGAACAAG-GTAGT 1347 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||| ||| ||||| | ||||| || ||||| ||||||||||||| |||| Sbjct 1346 GATTAATAGGGACAGTTGGGGGCATTCGTATTTAACTGTCAGAGGTGAAATTCTTAGATT 1287 Query 188 TATT 191 | || Sbjct 1286 TGTT 1283 >seq419 Length=70660 Score = 120 bits (132), Expect = 3e-25 Identities = 140/183 (77%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTC-GAATACATTA 65 ||||||||||||||| |||| ||| | || |||||||| | |||| | |||||| | Sbjct 28028 GGACTTTTACTTTGAGAAAAATAGGGTTTTTCAAGCAGGCTTGTTGCCCTGAATACTGCA 28087 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 |||||||||||| ||||||| | ||||| |||| || ||||||||||||| ||| Sbjct 28088 GCATGGAATAATAAGATAGGACCT-CGGTTATATT--GTTGGTTTCTAGGACCAAG-GTA 28143 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| |||| | ||| ||||| | ||||| | || |||| ||||||||||||| Sbjct 28144 ATGATTAATAGGTGCAGTTGGGGGCATTCGTATTTAGCTGACAAATGTGAAATTCTTGGT 28203 Query 186 TTT 188 ||| Sbjct 28204 TTT 28206 >seq285 Length=14561 Score = 91.5 bits (100), Expect = 2e-16 Identities = 87/109 (80%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG--CTCGAATACATTACC 67 ||||||||||| | |||| ||||| ||| |||||||| | || | |||||| | | Sbjct 14449 ACTTTTACTTTAAGAAAAATAGAGTGTTTCAAGCAGGCTTGTGGCCCTGAATACTGCAGC 14508 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGA 116 ||||||||||| ||||||| | ||||||| |||||| ||||||||||| Sbjct 14509 ATGGAATAATAAGATAGGACCT-CGGTTCTTTTTTGTTGGTTTCTAGGA 14556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511957468000