Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2897 183 5e-44 seq1404 127 3e-27 >seq2897 Length=29064 Score = 183 bits (202), Expect = 5e-44 Identities = 143/169 (85%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 109 GGTCCTCTCGTACTAA--GGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGG 166 |||||||||||||||| | | | || | |||| ||| | | | || ||||| || Sbjct 24460 GGTCCTCTCGTACTAAAAGAAAAACT--TTTCAATGTTCTTGTGTCTACATTGGATATGG 24517 Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 24518 ACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGA 24577 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| |||||||||||||| ||||||| ||||||||||||||| Sbjct 24578 CCAACCCTTGAGACCTACTTCAGCCTCAGGATGCGACGAGCCGACATCG 24626 >seq1404 Length=134076 Score = 127 bits (140), Expect = 3e-27 Identities = 93/108 (86%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||| ||||| |||||||||||||||| ||||| | || |||||||||||||| || | Sbjct 110063 CCGAACAGTCTCACGACGTTCTGAACCCAACTCGCATACCGCTTTAATGGGCGAATAGAC 110004 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||| ||||||||||||| ||||||| || | ||||||||| Sbjct 110003 CAACCCTTGAGACCTACTTCAGCTTCAGGATGCAACAAACCGACATCG 109956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780735138700