Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2897 185 3e-44 seq3608 77.0 1e-11 seq493 77.0 1e-11 >seq2897 Length=29064 Score = 185 bits (204), Expect = 3e-44 Identities = 247/338 (73%), Gaps = 13/338 (4%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||| || |||| ||| |||| ||||||| |||||||||| | ||||| Sbjct 27552 TCTGATTAGCTAATTAATAAGATAATAACTTATTAAGGCGAAGATCAGTAGCTGCCCTGA 27611 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 ||||| || | |||||||||| | ||| | || | ||||||||||||||||||| ||||| Sbjct 27612 GAGGGGGACCAGCCACATTGGGATTGAAATACAGCCCAAACTCCTACGGGAGGCTGCAGT 27671 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 | ||||| || ||||| || |||| ||| |||| || | ||||| || || || Sbjct 27672 GAGGAATCTTCTGCAATGAGCGCAAGCTTGACAGAGCATCGTCACGTGAAGGAAGACAGC 27731 Query 344 -----CTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAG-ATAATGACGGTACTTGAG--G 394 || || ||||| || | | || || | | ||| |||| | || || Sbjct 27732 TAATTATTATAGTTGTAAACTTCTTTTACTTAAAAATGAATACTGAC---ATTTAAGTAA 27788 Query 395 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 454 | ||| |||| |||| |||||||||||||||||||| ||| || | |||||||| Sbjct 27789 ATAAAGTATCGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTAT 27848 Query 455 CCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 || ||||||| |||||||||| || ||||||||||| Sbjct 27849 CCAAAATTACT-GGGCGTAAAGCGTATGTAGGTGGTTT 27885 >seq3608 Length=5090 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||||| | ||||| |||| || | |||||| ||||| ||| || | ||||||||||| Sbjct 2618 AGTAGCTGCCCTGACAGGGGGACCAGCCACAATGGAATTGAAGTACAGCCCAAACTCCTA 2677 Query 270 CGGGAGGCAGCAGTGGGGAA 289 |||||||| |||||| |||| Sbjct 2678 CGGGAGGCTGCAGTGAGGAA 2697 >seq493 Length=11842 Score = 77.0 bits (84), Expect = 1e-11 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 416 TGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAA 475 |||||||||||||||||| ||| || | |||||||||| ||||||| ||||||||| Sbjct 4831 TGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCAAAATTACT-GGGCGTAAA 4773 Query 476 GGGTGCGTAGGTGGTTT 492 | || ||||||||||| Sbjct 4772 GCGTATGTAGGTGGTTT 4756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497471580800