Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2897 96.9 8e-18 seq493 84.2 5e-14 >seq2897 Length=29064 Score = 96.9 bits (106), Expect = 8e-18 Identities = 226/340 (66%), Gaps = 27/340 (8%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 |||| |||| |||||||||||||||||||| ||| || | |||||||||| ||||| Sbjct 27798 CGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCAAAATTA 27857 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA------GTCAGAGGTGAAAGGCTATGG 132 |||||||||||| || |||||||||| |||| | | || ||| |||| Sbjct 27858 CTGGGCGTAAAGCGTATGTAGGTGGTT--TTAATATATTTTTATAGAAATAAGACTATAT 27915 Query 133 CTCAACCCCGGGACTGCTTTT------GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAG 186 | || |||| ||| | ||||||| ||||| || Sbjct 27916 AT-----------TTGTTTTTTGTAAAAAAATTATTAAACTAGAGTCTGTTAGGGGTAAA 27964 Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 |||||| | | | || |||||||||| ||||| | | ||| |||| ||||||| Sbjct 27965 AGGAATTTTTTGAGGAGTAGTGAAATGCGAAGATACAAAAAAGAAGACCAAAAGCGAAGG 28024 Query 247 CGGCTTGCT-GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 | || || || | || ||||||||| || |||||| || |||||| |||||| Sbjct 28025 CATTTTACTGGGGCAGT-ACTGACACTAAGATACGAAAGTTAAGGTAGCAAATGGGATTA 28083 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 || |||| |||||| | |||||||||| ||||| || Sbjct 28084 GAGACCCCAGTAGTCTTAACTGTAAACGATGGATACTCGG 28123 >seq493 Length=11842 Score = 84.2 bits (92), Expect = 5e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 31 TGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAG 90 |||||||||||||||||| ||| || | |||||||||| ||||||||||||||||| Sbjct 4831 TGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCAAAATTACTGGGCGTAAAG 4772 Query 91 GGTGCGTAGGTGGTTT 106 || ||||||||||| Sbjct 4771 CGTATGTAGGTGGTTT 4756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203096825600