Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq419 201 2e-49 seq3028 199 7e-49 seq7058 113 9e-23 seq3063 102 2e-19 seq1586 86.0 1e-14 >seq419 Length=70660 Score = 201 bits (222), Expect = 2e-49 Identities = 235/314 (75%), Gaps = 10/314 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCG----GCTTC 75 || ||||||||| ||||||||| |||| || | |||| ||| ||||| Sbjct 28610 GAACGAGACCTTGGCCTGCTAAA----CAGGGTCGGTGACCTCGGTCACCGCATCGCTTC 28665 Query 76 TTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||||| | | || | | | |||||| || ||||||||||||||||||||| Sbjct 28666 TTAGAGGGACTTTGAGTGTCTAACGCAGGGAAGTCCGAAGCAATAACAGGTCTGTGATGC 28725 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||||||||||||||||||||||||||||| | |||||||||| | ||||| Sbjct 28726 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCATGCAACGAGTTC-TTACCTT 28784 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 | ||| || |||||||| ||||| || | ||||| ||||||||| |||||||| Sbjct 28785 GACCGACGGGGCTGGGTAACCTTGTGAAGGTGCATCGTGATGGGGATAGGTTATTGCAAT 28844 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 |||| |||||| || ||||||| ||| |||| ||| |||| || || || || Sbjct 28845 TATTTACCTTCAAAAAGAAATGCCTCGTAGGCGCAATTCAGCAGCTTGCCCCGAATAAGT 28904 Query 315 CCCTGCCCTTTGTA 328 ||||| | ||||| Sbjct 28905 CCCTGTCTCTTGTA 28918 >seq3028 Length=25216 Score = 199 bits (220), Expect = 7e-49 Identities = 237/317 (75%), Gaps = 16/317 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG---CTTTGG----CGGGTCGCCGGC 72 || ||||||| | |||||||||||| || | | |||||| || || || Sbjct 25156 GAACGAGACCCTGGCCTGCTAAATAG---GGTCGGTGACTTTGGTTACCGTATC----GC 25104 Query 73 TTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | || || | | | ||||||||||||||| ||||||||||||| Sbjct 25103 TTCTTAGAGGGACTTTGCGTGTCTAACGCAAGGAAGTTTGAGGCAACAACAGGTCTGTGA 25044 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 || ||||||||||||||| | ||||||||| |||||||| | ||| |||||| || | Sbjct 25043 TGTCCTTAGATGTTCTGGCCTGCACGCGCGTTACACTGATGCATGCAATGAGTTCTTC-C 24985 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| || |||||||||||||| | | | || |||| |||| ||||| Sbjct 24984 CTTGGCCGAGGGGGCTGGGTAATCTTGTGAGGGTGCATTTTGAAGGGGGTAGATTATTGC 24925 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| || ||||||||||||||| ||| ||| |||| |||| |||| ||| || || Sbjct 24924 AATTGTTAGTCTTCAACGAGGAATTCCTTGTAGGCGCAAGTCAGCAGCTTGCGCCGAATA 24865 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||| | ||||| Sbjct 24864 AGTCCCTGTCTCTTGTA 24848 >seq7058 Length=249 Score = 113 bits (124), Expect = 9e-23 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||||| ||||||||||||||||||||||| |||| Sbjct 246 TCGTGATGGGGATAGATTATTGCAATTATTAGTCTTCAACGAGGAATGCCTAGTAGGCGC 187 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||| ||| ||||||||||||||| ||||| Sbjct 186 AAGTCAGCAGCTTGCGCCGATTACGTCCCTGCCTCTTGTA 147 >seq3063 Length=23918 Score = 102 bits (112), Expect = 2e-19 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 119 AACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCA 178 ||||||||||||||||||||||||||||||||| |||||||||||||||||| | | Sbjct 89 AACAGGTCTGTGATGCCCTTAGATGTTCTGGGCTGCACGCGCGCTACACTGATGCATGCC 148 Query 179 ACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAAT 214 ||||||| | |||||| ||| || ||||||||| Sbjct 149 ACGAGTT-TTTACCTTGACCGACGGGGCTGGGTAAT 183 >seq1586 Length=3397 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 |||||||| |||||||||||| ||||||||||||||||||| ||| |||| |||| | Sbjct 792 GGGATAGATTATTGCAATTATTAGTCTTCAACGAGGAATGCCTTGTAGGCGCAAGTCAGC 733 Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| || || ||||||| | ||||| Sbjct 732 AGCTTGCGCCGAATAAGTCCCTGTCTCTTGTA 701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947118777600