Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3028 385 2e-104 seq509 279 2e-72 seq3858 203 1e-49 seq1713 199 1e-48 seq5674 192 2e-46 seq945 159 1e-36 seq3021 138 4e-30 seq2781 138 4e-30 seq2549 122 3e-25 seq2391 120 1e-24 seq2724 114 4e-23 seq419 114 4e-23 seq4520 109 2e-21 seq1 93.3 1e-16 seq1977 82.4 2e-13 >seq3028 Length=25216 Score = 385 bits (426), Expect = 2e-104 Identities = 360/450 (80%), Gaps = 16/450 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| ||| ||||||||||||||| ||| Sbjct 20839 CTTTTGGTCAACATGAGATTTCTGTTCTCATTGACCTTGCCTTAGGACACCTGCTCTATT 20898 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| |||||||||||||||||||||| |||||||| | || || | |||| Sbjct 20899 ATTTCACAGGTGTGCCGCCCCAGCCAAACTCCGCACCTGACTGTCTCTTCCGCATTGATC 20958 Query 127 GGC---CCGCGAAGGACCTTAACGCCAGAAA---ATGGTCGGTGAAGACCAGT-TCCGCT 179 || ||| || | ||||||| | || ||| ||| | | | | | || || || Sbjct 20959 AGCACCCCGAGAGGCACCTTAA-GACAAAAACACATG--CCGCGCATGC--GTCTCAACT 21013 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 | | || |||||| || || |||||||||||||||||||| ||||||| |||| Sbjct 21014 TGACGGAATAAGTAGAACGACACTAAGGGTAGTGGTATTTCACCATCGCCGAA---GCTC 21070 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||| | ||||||| | ||||| || |||||| |||||||||||||||||||||||| Sbjct 21071 CCACCAGTGCTACACCCCCGAAGTCGTTCCACAAACTCGGACTAGAGTCAAGCTCAACAG 21130 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||||| Sbjct 21131 GGTCTTCTTTCCCAGCTGATTCCGCCAAGCCCGTTCCGCCGGCTGTGGGTTCACTAGATA 21190 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| || Sbjct 21191 GTAGATAGGGACAGTCGGAATCTCGTTAATTCATTCATGCACGTCACTAATTAGATGGCG 21250 Query 420 AGGCATTTGGCTACCTTAAGAGAG-TCATA 448 |||||||||||| |||||| | || ||||| Sbjct 21251 AGGCATTTGGCTTCCTTAACACAGATCATA 21280 >seq509 Length=68321 Score = 279 bits (308), Expect = 2e-72 Identities = 212/249 (85%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 194 aaaaaaCGATA---AGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCT 250 || |||||| | |||||| ||||||||||| ||||||| |||| ||| ||| || Sbjct 5464 AATAAACGAAACTGAGGGTATTGGTATTTCACGATCGCCGAA---GCTCTCACCTATGCT 5408 Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 310 ||||| | ||||| | ||||||||||||||||||||||||||||||||| |||||||| Sbjct 5407 ACACCCCCCAAGTTGCTCCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGCCTTCTTTC 5348 Query 311 CCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 ||||||||||||||||| |||||||||||| |||||| || | ||||||||||||||| Sbjct 5347 CCCGCTGATTCCGCCAATCCCGTTCCCTTGACTGTGGGGTCACGCGATAGTAGATAGGGA 5288 Query 371 CAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGC 430 || | |||||| ||||| |||| ||||| ||||||||||||| |||||||||||||||| Sbjct 5287 CAATAGGAATCGCGTTAGTCCACTCATGGACGTCACTAATTAGCTGACGAGGCATTTGGC 5228 Query 431 TACCTTAAG 439 ||||||||| Sbjct 5227 TACCTTAAG 5219 >seq3858 Length=3120 Score = 203 bits (224), Expect = 1e-49 Identities = 185/230 (80%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 205 AGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTC 264 ||||||||||| || | ||||||| ||| || | ||| ||||||| | |||| | Sbjct 815 AGGGTAGTGGTCCTTTGCGATCGCCGAA---GCTACCGCCTATGCTACACCCCCCAAGCC 759 Query 265 ATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 ||| | ||||||||||||||| ||| | |||||| ||||||||| ||||||||| | Sbjct 758 GTTTTAAAAAGTCGGACTAGAGCCAACCCGAACAGGACCTTCTTTCCAAGCTGATTCCAC 699 Query 325 CAAGCCCGTTCCCT-TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||||||||| || |||| | || || ||| |||||| ||||||||| ||| ||| Sbjct 698 TGAGCCCGTTCCCCGTGACTGTAGGTT-GCGAGAGAGTAGAAGGGGACAGTGAGAAACTC 640 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 639 GTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTAGCTAC 590 >seq1713 Length=2861 Score = 199 bits (220), Expect = 1e-48 Identities = 184/230 (80%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 205 AGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTC 264 ||||||||||| || | ||||||| | | || | ||| ||||||| | |||| | Sbjct 2350 AGGGTAGTGGTCCTTTGCGATCGCCGAATC---TACCGCCTATGCTACACCCCCCAAGCC 2406 Query 265 ATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 ||| | ||||||||||||||| ||| | |||||| ||||||||| ||||||||| | Sbjct 2407 GTTTTAAAAAGTCGGACTAGAGCCAACCCGAACAGGACCTTCTTTCCAAGCTGATTCCAC 2466 Query 325 CAAGCCCGTTCCCT-TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||||||||| || |||| | || || ||| |||||| ||||||||| ||| ||| Sbjct 2467 TGAGCCCGTTCCCCGTGACTGTAGGTT-GCGAGAGAGTAGAAGGGGACAGTGAGAAACTC 2525 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2526 GTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTAGCTAC 2575 >seq5674 Length=392 Score = 192 bits (212), Expect = 2e-46 Identities = 163/198 (82%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || || | ||| ||||||| | |||| | ||| | ||||||||||||||| ||| | || Sbjct 392 CTACCGCCTATGCTACACCCCCCAAGCCGTTTTAAAAAGTCGGACTAGAGCCAACCCGAA 333 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT-TGGCTGTGGTTTCGCTA 355 |||| ||||||||| ||||||||| | ||||||||||| || |||| | || || | Sbjct 332 CAGGACCTTCTTTCCAAGCTGATTCCACTGAGCCCGTTCCCCGTGACTGTAGGTT-GCGA 274 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || |||||| ||||||||| ||| |||||| |||||||||||||||||||||||||||| Sbjct 273 GAGAGTAGAAGGGGACAGTGAGAAACTCGTTCATCCATTCATGCGCGTCACTAATTAGAT 214 Query 416 GACGAGGCATTTGGCTAC 433 |||||||||||| ||||| Sbjct 213 GACGAGGCATTTAGCTAC 196 >seq945 Length=60622 Score = 159 bits (176), Expect = 1e-36 Identities = 200/273 (73%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 ||| || ||||||||||| | |||||||| ||||| | ||| ||||||| || ||||| Sbjct 17780 GTCGTTCCACAAAGTCGGGCGAGAGTCAATATCAACGGAGTCGCCTTTCCCAGCGGATTC 17721 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381 || | | |||| || ||||||||| |||||| | || | ||| | || | |||||| Sbjct 17720 CGGCGAACCCGCCCCTTTGGCTGTGTTTTCGCCATGTAATGGATGCAGGCATTAGGAATC 17661 Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA-AGA 440 ||||| | ||| || | |||| ||| | ||||||| || ||||| ||||||||| ||| Sbjct 17660 TCGTTGACTCATGCACTCACGTCCCTACTAAGATGACAAGACATTTTGCTACCTTACAGA 17601 Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||| ||| | || ||| | ||| ||| | |||| |||| | ||||||| Sbjct 17600 ATATCATGGTTGCGGTCGTTGTTAGCAAGCGATTGCT----TTTCGTCACATGGACATTC 17545 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| ||||||| | | |||| || Sbjct 17544 AGAGCACTGGGCTGAAATCATACTCTGTCAGCA 17512 >seq3021 Length=96511 Score = 138 bits (152), Expect = 4e-30 Identities = 175/236 (74%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| ||| |||||||||||| ||| Sbjct 75907 CTTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTCAGGACACCTGCGCTATT 75966 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 || |||||||||||||||||||||||||||||||||||| |||| | | |||| Sbjct 75967 ATTCCACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTGTGTCTCCCGCATTGATC 76026 Query 127 GGC-CCGCGAAGG--ACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCA 182 || || |||||| ||||||| | | || | | | | | | || || ||| | Sbjct 76027 AGCACCCCGAAGGGCACCTTAAAACAAAAACACATGCCGCGCATGC--GTCTCAACTTGA 76084 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCT 238 ||| ||||||||| || | |||||||||||||||||| ||||||| || || Sbjct 76085 CTGAATAAGTAAAACGACACTGAGGGTAGTGGTATTTCACGATCGCCGAAGCGACT 76140 >seq2781 Length=104275 Score = 138 bits (152), Expect = 4e-30 Identities = 182/251 (73%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 |||||||||||| |||| ||||||||| |||| | ||| || ||| ||||| | || Sbjct 88439 AAGCTCAACAGGTTCTTTTTTCCCCGCCAATTCTGTCAATCCGGTTTTTGTGGCTTTAGT 88498 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 ||| ||||| ||||||| | |||||||| | | | || ||||||||||| | ||| | Sbjct 88499 TTCACTAGAAAGTAGATGGCGACAGTGGAAGTTTTGTCGGTCCATTCATGCAAGACACAA 88558 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 |||| ||||| ||||||| |||| ||| |||| |||| ||| ||| ||| || Sbjct 88559 ATTAAATGACCGGGCATTTTGCTAACTTGAGAGCGTCACGCCTACGTAGTCCG-TTAACC 88617 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 | | | ||||||||| | | || ||| |||||||| ||| |||| | ||||| | Sbjct 88618 ATGGTCGATTGAATTTCATTATATTAACACTCAGAGCATCGGGAAGAAGCCGGATTGCTT 88677 Query 529 CAACATCACTT 539 || || || || Sbjct 88678 CAGCAGCATTT 88688 >seq2549 Length=35424 Score = 122 bits (134), Expect = 3e-25 Identities = 102/124 (82%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 312 CCGCTGAT--TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 ||||||| ||||||| |||||||| ||| ||||| ||||||| |||||||||||| Sbjct 20860 CCGCTGAGGCTCCGCCACTGCCGTTCCCGTGGTTGTGGGTTCGCTACGTAGTAGATAGGG 20801 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 ||||||| || |||| ||| |||||||| | |||| |||| | ||||||||||||||| Sbjct 20800 ACAGTGGTAAAGTCGTAAATTCATTCATGTGTGTCAATAATGATATGACGAGGCATTTGT 20741 Query 430 CTAC 433 |||| Sbjct 20740 CTAC 20737 Score = 100 bits (110), Expect = 9e-19 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 |||| | |||| |||||||| |||||||| | ||||| ||| || | ||||||||||| Sbjct 19663 GTCACAATTACATCCGCCGTTAACCCGCGCGTTATTGAAATTCATCGCATTGACATTCAG 19604 Query 503 AGCACTGGGCAGAAATCACATTGCGTCA 530 ||||||||||||||||||||||||||| Sbjct 19603 CGCACTGGGCAGAAATCACATTGCGTCA 19576 >seq2391 Length=857 Score = 120 bits (132), Expect = 1e-24 Identities = 68/69 (99%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 857 ACAGTGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGG 798 Query 430 CTACCTTAA 438 ||||||||| Sbjct 797 CTACCTTAA 789 >seq2724 Length=543 Score = 114 bits (126), Expect = 4e-23 Identities = 65/66 (98%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 AGTGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCT 60 Query 432 ACCTTA 437 |||||| Sbjct 61 ACCTTA 66 >seq419 Length=70660 Score = 114 bits (126), Expect = 4e-23 Identities = 82/94 (87%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC---TTCACTTTGACATT 499 ||||||||||| |||||||| ||| ||||||| ||||||||| |||| |||||||| Sbjct 33321 GTCATAGTTACGTCCGCCGTTAACCAGCGCTTGATTGAATTTCATCTTCAACTTGACATT 33262 Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||| |||||| || Sbjct 33261 CAGAGCACTGGGCAGAAATCACATCGCGTCAGCA 33228 >seq4520 Length=1246 Score = 109 bits (120), Expect = 2e-21 Identities = 66/70 (94%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 |||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1246 TACACCCCCCAAGTCGTTCCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 1187 Query 310 CCCCGCTGAT 319 |||||||||| Sbjct 1186 CCCCGCTGAT 1177 >seq1 Length=242787 Score = 93.3 bits (102), Expect = 1e-16 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||| || || ||| | ||||||||||||||| |||| Sbjct 51274 CTTTTGGTCAACATGAGATTTCTCTTATCATTGAACCTGCCTTAGGACACCTGCATTATT 51215 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAAC 95 ||| |||||||||||||||||||||||| Sbjct 51214 ATTTCACAGATGTGCCGCCCCAGCCAAAC 51186 >seq1977 Length=43631 Score = 82.4 bits (90), Expect = 2e-13 Identities = 119/163 (73%), Gaps = 9/163 (6%) Strand=Plus/Plus Query 208 GTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAA--GTCA 265 ||||||||||||| | || || ||||||| | | ||||||| | ||| || | Sbjct 5179 GTAGTGGTATTTCCTCATCACCAAA---GCTCCCAAGTGTGCTACACC-CGCAAACGT-A 5233 Query 266 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCC 325 || ||||||||||||| | || | || |||||||||||||| |||||| |||||| | Sbjct 5234 TTCCACAAAGTCGGACGATAGCCTAGATCAACAGGGTCTTCCTTCCCCCCTGATT--GGG 5291 Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 || || |||| | |||||| | | | || |||| | ||||| Sbjct 5292 AAACCGGTTCTCCTGGCTGCGACTCAGATATATAGCATATAGG 5334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635059781600