Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq7700 251 2e-64 seq2897 134 5e-29 seq3530 100 1e-18 >seq7700 Length=220 Score = 251 bits (278), Expect = 2e-64 Identities = 190/221 (86%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26 CTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAGGGAACCTTTGGGC 85 |||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||| Sbjct 220 CTCCCTTGTGCATTTACACTCGCCACCTGATTGCCGTCCAGGTTGAGGGAACCTTTGGGC 161 Query 86 GCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCC 145 |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 160 GCCTCCGTTACATTTTAGGA-GGCAACCGCCCCAGTTAAACTACCCGCCAGGCACTGTCC 102 Query 146 CCAACCCAGA-TCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGTATTTCAACA 204 | || || || ||| || | ||||||||| ||| |||| ||||||||||||||||||| Sbjct 101 CTAAACCCGATTCAGGGTTCGAGGTTAGATGCCCAATACGATCAGAGTGGTATTTCAACA 42 Query 205 ACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCC 245 |||||||| | | ||| |||| | | ||| |||||||| Sbjct 41 ACGACTCCGCCCCAACTGGCGTCGAGGTTTCACAGTCTCCC 1 >seq2897 Length=29064 Score = 134 bits (148), Expect = 5e-29 Identities = 94/107 (88%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 372 AGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTT 431 |||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||| Sbjct 25117 AGACAGCATCCAAGTCGTTACACCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 25176 Query 432 CGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 ||||||||| ||| ||||||||||| |||||||||||||| |||| Sbjct 25177 CGCTACCTTTGGACCGTTATAGTTACAGCCGCCGTTTACTGGAGCTT 25223 >seq3530 Length=6259 Score = 100 bits (110), Expect = 1e-18 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||| ||| ||||||||| |||||| |||||| ||||| ||||||||||||||||| Sbjct 1759 GAGACATTAGGAAAGTCGTTACACCATTCATGCAGGACGGAATTTACCCGACAAGGAATT 1700 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 | |||||||| ||| || | | |||| ||||||||||| Sbjct 1699 TTGCTACCTTTGGACCGTCAGA-TTACAGCCGCCGTTTAC 1661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702254019200