Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20brunetti_20[genbank_20GCA_5F000499725.1_202013-11-07] 8,575 sequences; 66,890,165 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq285 493 4e-137 seq419 389 1e-105 seq5032 300 5e-79 seq1586 279 2e-72 seq8562 114 4e-23 >seq285 Length=14561 Score = 493 bits (546), Expect = 4e-137 Identities = 421/509 (83%), Gaps = 14/509 (3%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATT-GTCACTACCTCC- 62 ||||||||||||||| | ||| |||||| || ||||| || ||||||||||| Sbjct 14220 TCATTCCAATTACAAAGCATTAAAT-GCCCTGCATTGTTATTTTTTCGTCACTACCTCGA 14162 Query 63 --CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | || | | ||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 14161 AACTGTTTTCG--TTGGGTAATTTGCGCTCCTGCTGCCTTCCTTAGATGTGGTAGCCGTT 14104 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||| Sbjct 14103 TCTCAGGCTCCCTCTTCGGAATCGAACCCTAATTCCCCGTTACCCGTCACTGCCACGGTA 14044 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || |||||| ||||| | ||||||| |||||| |||||||| | ||||| ||| Sbjct 14043 GGCCAATACCCTACCGTCGAATGCTGATAGGTCAGAAACTTGAATGATCAATCGCGGGCC 13984 Query 241 C-AAGGCCA--TGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTT 297 | || |||| |||||| |||| |||| || ||||||||||| || | ||| ||||| Sbjct 13983 CGAAAGCCAACTGCGATCCGTTCGGTTACTACGAATCACCAAGACTCCACAAAGTGCGTT 13924 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG--GGTTTTTAGCATGTATTAGC 355 |||||| || |||||||| ||| ||| ||| || || | ||| |||||||||||| Sbjct 13923 GGTTTTGTAGCTAATAAACACAGCCCCTCCATAGAAGGAAGCCTTTGCGCATGTATTAGC 13864 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||| ||||||||||||| || | || ||||||||||| ||||||| ||| Sbjct 13863 CATAGAATTACCATGGTTATCCATGTAAAAATG-ACCATCAAATAAACTATAACTGTTTT 13805 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAAT 475 |||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| Sbjct 13804 AATGAGCCATTCGCAGTTTCACCGTATA-AAAGCTTATACTTAGACATGCATGGCTTAAT 13746 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| ||| ||| Sbjct 13745 CTTTGAGACAAGCATATGACTCCTGCCAG 13717 >seq419 Length=70660 Score = 389 bits (430), Expect = 1e-105 Identities = 394/506 (78%), Gaps = 23/506 (5%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||| ||||| | ||| ||||||||| ||||| | |||||||||| Sbjct 27801 TCATTCCAACTACAAAGCATTAAAT-GCCCTGTATTGTTATTTCTCATCACTACCTCGAA 27743 Query 65 G-TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 27742 ACTGTTTTCATTCGGTAATTTGCGCGCCTGCTGCCTTCCTTATATGTGGTAGCCGTTTCT 27683 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||| ||||||||||||||||||||||||||| | || ||||||| Sbjct 27682 CAGGCTCCCTCTCCGGGATCGAACCCTAATTCCCCGTTACCCGTCACTGTCACGGTAGGC 27623 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-A 242 || || |||||| | | ||| ||| |||||| ||||||| ||| ||| ||| | | Sbjct 27622 CAATACCCTACCGT----TGCTGAAAGGTCAGAAACTTGAATGCTCCAGCGCGGGCCCGA 27567 Query 243 AGGCCA--TGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 | ||| ||||| |||| |||| |||||||||||||| | |||||| Sbjct 27566 AAACCAACGGCGATCCGTTCGGTTACTATGAATCACCAAG----------CTGGGTTGGT 27517 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGG--GGTTTTTAGCATGTATTAGCTCT 358 ||| ||||||| ||| ||| ||| | | | | || | | | |||||||||||| | Sbjct 27516 TTTGTATCTAACAAACACAGCCCCTTCAATGAAGGAAGCCTATGCGCATGTATTAGCCAT 27457 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||| || |||||||||||| || | || ||||||||||| | ||||| |||||| Sbjct 27456 AGAATTAGCATAGTTATCCATGTAAAAATG-ACCATCAAATAAACTAAAACTGTTTTAAT 27398 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||| ||||||||||||||| || || | || ||||||||||| ||||||||||||| ||| Sbjct 27397 GAGACATTCGCAGTTTCACCGTGTA-AATGTTTATACTTAGAGATGCATGGCTTAACCTT 27339 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||| ||||||| Sbjct 27338 TGAGACAAGCATATGACTCCTGGCAG 27313 >seq5032 Length=653 Score = 300 bits (332), Expect = 5e-79 Identities = 255/309 (83%), Gaps = 5/309 (2%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| ||||||||| ||||| | ||||||||||| Sbjct 308 TCATTCCAATTACAAAGCATTAAAT-GCCCTGTATTGTTATTTCTCGTCACTACCTCGAA 250 Query 65 G-TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 249 ACTGTTTTCATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCT 190 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| Sbjct 189 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCACTGCCACGGTAGGC 130 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-A 242 || || |||||| | ||||| ||||||| |||||| |||||||| ||||||| ||| | | Sbjct 129 CAATACCCTACCGTTGAAAGCTGATAGGCCAGAAACTTGAATGATCCATCGCGGGCCCAA 70 Query 243 AGGCCA--TGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 | |||| |||||| |||| |||| |||||||||||||| || | | | | |||||| Sbjct 69 AAGCCAACTGCGATCCGTTCGGTTACTATGAATCACCAAGACTCCACAAGGTGGGTTGGT 10 Query 301 TTTTTATCT 309 ||| ||||| Sbjct 9 TTTGTATCT 1 >seq1586 Length=3397 Score = 279 bits (308), Expect = 2e-72 Identities = 215/252 (85%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCG-TGTCGGGATTGGGTAATTTGCGCGCC 91 ||||||| ||||| | ||||||||||| ||| ||||||||||||||||||| Sbjct 1616 CCTGTATTGTTATTTCTCGTCACTACCTCGAAACTGTTTTCATTGGGTAATTTGCGCGCC 1675 Query 92 TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 TGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 1735 Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG 211 |||||||||||||||| | ||| ||||||||| || |||||| ||||||| ||||||| Sbjct 1736 ATTCCCCGTTACCCGTCACTGCCACGGTAGGCCAATACCCTACCGTCGAAAGCTGATAGG 1795 Query 212 GCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCA--TGCGATTCGTTAAGTTATTA 268 |||||| |||||||| ||||||| ||| | || |||| |||||| |||| |||| || Sbjct 1796 TCAGAAACTTGAATGATCCATCGCGGGCCCGAAAGCCAACTGCGATCCGTTCGGTTACTA 1855 Query 269 TGAATCACCAAG 280 |||||||||||| Sbjct 1856 TGAATCACCAAG 1867 >seq8562 Length=21781 Score = 114 bits (126), Expect = 4e-23 Identities = 108/134 (81%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 371 GTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 |||||||| |||| ||| || |||||||| | ||||||| | |||||| ||||| || Sbjct 15018 GTTATCCACGTAGAAAGC-ACCATCAAATACATTATAACTGTTCAAATGAGTCATTCCCA 14960 Query 431 GTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 ||| || |||| || || ||||||||||| |||||||| ||| ||||| ||||||| Sbjct 14959 ATTTACCT-TATATAT-GCGCATACTTAGACACGCATGGCTAAATTGTTGAGGCAAGCAT 14902 Query 491 ATGACTACTGGCAG 504 |||||||||||||| Sbjct 14901 ATGACTACTGGCAG 14888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510270483200