Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2471 280 3e-73 seq3406 221 2e-55 seq1007 197 3e-48 seq3378 80.6 5e-13 seq1596 78.8 2e-12 >seq2471 Length=2597 Score = 280 bits (310), Expect = 3e-73 Identities = 231/279 (83%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||||| ||| | ||| |||||||||||||||||||||||||| Sbjct 1511 TGCTCTTAACTGAGTGTGCTCAGGATCTGTGACGTTTACTTTGAAAAAATTAGAGTGTTC 1570 Query 100 AAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTA 159 |||||| ||| ||| |||||||| ||||||||||||| ||||||||| | ||||||| Sbjct 1571 AAAGCAAGCCAGCGCTTGAATACATAAGCATGGAATAATGGAATAGGACTTT-GGTTCTA 1629 Query 160 TTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATT 219 |||||||||||||| | ||| ||||||||||| || || ||| ||||| | ||||| Sbjct 1630 TTTTGTTGGTTTCTGGAACCTTAGTAATGATTAAGAGAGACAGTTGGGGGCATTCGTATT 1689 Query 220 CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCAC 279 ||||||||||||||||||||||||||| ||||| ||||||||||||||| || | Sbjct 1690 TCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACTACTGCGAAAGCATTTGC 1749 Query 280 CAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| |||||||||||||||| ||||||||||||| || Sbjct 1750 CAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 1787 >seq3406 Length=16985 Score = 221 bits (244), Expect = 2e-55 Identities = 203/250 (81%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTC-GAATACATTAGC 128 ||||||||||||| |||| || |||||| ||||| || | | || | |||||| ||| Sbjct 16310 ACTTTTACTTTGAGAAAAATAAAGTGTTTCAAGCACGCTTGTCGCCCTGAATACTGCAGC 16369 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 ||| |||||||||||||||| | |||||||||||||||||||||||||||| |||| Sbjct 16370 ATGAAATAATAGAATAGGACCT-CGGTTCTATTTTGTTGGTTTCTAGGACCAAGACAATG 16428 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| ||||| | |||| || |||||||||| |||||||| |||| Sbjct 16429 ATTAATAGGGACAGTTGGGGGCATTCATATTTAACTGTCAGAGGTTAAATTCTTACATTT 16488 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||||||||||||||| || ||||||||| |||||||||||| ||| || Sbjct 16489 GTTATAGACGAACTACTGCGAAAGCATTTGCCAAGGATGATTTCATTAATCA-AGAATGA 16547 Query 309 AAGTTAGGGG 318 || |||||| Sbjct 16548 CAG-TAGGGG 16556 >seq1007 Length=55227 Score = 197 bits (218), Expect = 3e-48 Identities = 166/200 (83%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTC-GAATACATTAGC 128 ||||||||||||| |||| ||||||||| ||||||| | | || | |||||| ||| Sbjct 194 ACTTTTACTTTGAGAAAAATAGAGTGTTTCAAGCAGGTTTGTCGCCCTGAATACTGCAGC 135 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 ||||||||||| ||||||| | |||||||||||||||||||||||||||| |||| Sbjct 134 ATGGAATAATAAGATAGGACCT-CGGTTCTATTTTGTTGGTTTCTAGGACC-----AATG 81 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| ||||| | ||||| || ||||||||||||||||||| ||||| Sbjct 80 ATTAATAGGGACAGTTGGGGGCATTCGTATTTAACTGTCAGAGGTGAAATTCTTAGATTT 21 Query 249 ATTGAAGACTAACTACTGCG 268 || ||||| |||||||||| Sbjct 20 GTTAAAGACGAACTACTGCG 1 >seq3378 Length=17521 Score = 80.6 bits (88), Expect = 5e-13 Identities = 166/240 (69%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAG 127 || |||||||||| || | |||||||| |||||||| | | ||| ||| || | Sbjct 8167 ACCTTTACTTTGAGAACAACAGAGTGTTTCAAGCAGGCGTGT-CTCCATGAAGACTGCAA 8225 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 || || | |||| | | | | | || || || |||||||| || ||||| ||||| Sbjct 8226 CACGGGAGAATAAGACAAGGCAT-CGTTTATACTTTGTTGGCTTTTAGGAGATAGGTAAT 8284 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||||| | |||| ||| | | || ||||| | |||| ||||||| | | |||| || Sbjct 8285 GATTAGTGGGGACAGTTTGTGCATTC-GTATTACACTGTCCGAGGTGATACTTTTGGTTT 8343 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTC-ACCAAGGATGTTTTCATTAATCAGTGAAC 306 | | | || || ||||||||||| | | | | ||||||| ||||||| |||||| Sbjct 8344 TCGTAAGGAAAAATTACTGCGAAAGGATCCTGCTGATGATGTTTACATTAAT--GTGAAC 8401 >seq1596 Length=5565 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/80 (84%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTC-GAATACATTAGC 128 ||||||||||||| |||| ||||||||| |||||||| | | || | |||||| ||| Sbjct 108 ACTTTTACTTTGAGAAAAATAGAGTGTTTCAAGCAGGCTTGTCGCCCTGAATACTGCAGC 167 Query 129 ATGGAATAATAGAATAGGAC 148 |||||||||||| ||||||| Sbjct 168 ATGGAATAATAGGATAGGAC 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915167382272