Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2729 230 1e-57 seq1013 138 5e-30 seq284 134 6e-29 seq1797 123 1e-25 seq1546 123 1e-25 seq1125 120 1e-24 seq3102 109 2e-21 seq3157 102 3e-19 seq754 91.5 6e-16 >seq2729 Length=1445 Score = 230 bits (254), Expect = 1e-57 Identities = 235/307 (77%), Gaps = 30/307 (10%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TC 462 || ||||||||| |||||||||||||||||||||||| | |||||| || ||||| | Sbjct 750 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCTTAGGGTGCTTG 809 Query 463 AAACCCGTGCGCGTAATGAAAGTGAA--------------CGGAGGTGGGAACCCGTGA- 507 |||||| || |||||||||||| | |||| | || ||| Sbjct 810 AAACCCAGAGGCAGAATGAAAGTGAAGACGGCTTCGGCCGCTGAGGCGAGATTCCGGCTC 869 Query 508 --------GGGTGCACCATCGACCGATCCTGATGT---CTTCGGATGGATTTGAGTAAGA 556 || ||| | | |||||| ||| | | ||| ||| || ||||||||||| Sbjct 870 TCGTAGCCGGACGCATCGTTGACCGA-CCTATTCTACTCTTAGGAAGG-TTTGAGTAAGA 927 Query 557 GCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGA 616 || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 928 GCGTGTCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGA 987 Query 617 AACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 ||||||||||| |||||| |||| | ||| ||||||||||| |||||||| ||||||||| Sbjct 988 AACTCTGGTGGTGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATA 1047 Query 677 GGGGCGA 683 ||||||| Sbjct 1048 GGGGCGA 1054 Score = 178 bits (196), Expect = 5e-42 Identities = 139/166 (84%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| |||||| |||||||||||||||||| | ||| || |||||| | | ||||||| Sbjct 194 TTCGAAGAGTCGGGTTGTTTGGGAATGCAGCCCAAAAATGGTGGTAAACTCCATCTAAAG 253 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| || | ||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 254 CTAAATACTGACGTGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 313 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| |||||||||||||||| |||||||| ||| ||||||| || Sbjct 314 TTGAAAAGAGAGTTAAAAAGTACGTGAAACCGTTTGAAGGGAAACG 359 >seq1013 Length=115933 Score = 138 bits (152), Expect = 5e-30 Identities = 185/250 (74%), Gaps = 18/250 (7%) Strand=Plus/Minus Query 382 GATGCTGGCGT-AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||| | | || |||| || || ||||||||| ||||||||||||||||||||||| Sbjct 60940 GATGCTGCCCTTAACGGTTTCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 60881 Query 441 TCTATGCGAGTGTTTGGG-TGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 | | ||||||| | ||| ||| || || || || ||||||||||| ||| |||| Sbjct 60880 TATGTGCGAGTATGCGGGCTGT-AACCCTGTATGCACAATGAAAGTGA---GAGTAGGGA 60825 Query 500 -ACCCGTG---AGGGT-------GCACCATCGACCGATCCTGATGTCTTCGGATGGATTT 548 | || | ||| ||||| ||||||| | ||| | || || | ||| Sbjct 60824 GAGGTTTGCTTATGGTATTCCTCGCACCTACGACCGACCACGATCT-TTGTGAGAGGTTT 60766 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 |||| |||| | ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 60765 GAGTTGTAGCACATCTGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAG 60706 Query 609 CCAGAGGAAA 618 ||| |||| Sbjct 60705 TCAGGCGAAA 60696 >seq284 Length=178505 Score = 134 bits (148), Expect = 6e-29 Identities = 126/159 (79%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 512 GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGA 571 ||||| ||||||| | ||| | || || | ||||||| ||| | ||||| ||| Sbjct 156827 GCACCTACGACCGACCACGATCT-TTGTGAGAGGTTTGAGTTGTTGCACATCTGTTAGGA 156769 Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 |||||||| ||||||||||||||||| |||||||||| ||| |||| ||| ||||||| Sbjct 156768 CCCGAAAGGTGGTGAACTATGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGGC 156709 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 ||| |||| | ||| ||||||||||| |||||||| ||| Sbjct 156708 TCGTAGCGATACTGACGTGCAAATCGTTCGTCAAACTTG 156670 >seq1797 Length=4139 Score = 123 bits (136), Expect = 1e-25 Identities = 88/101 (87%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| |||||||||| ||| |||| ||| |||||||||| |||| | Sbjct 243 GTGAACTATGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGGCTCGTAGCGATA 302 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 303 CTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 343 >seq1546 Length=5159 Score = 123 bits (136), Expect = 1e-25 Identities = 88/101 (87%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| |||||||||| ||| |||| ||| |||||||||| |||| | Sbjct 448 GTGAACTATGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCTGATGGAGGCTCGTAGCGATA 389 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 388 CTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 348 >seq1125 Length=9273 Score = 120 bits (132), Expect = 1e-24 Identities = 128/168 (76%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||| | ||| | ||||| | | || |||| ||| ||||||| Sbjct 2638 GAGTCGCGTTCATTGGGATTTGAGCGCAAAATGTGTGATACGTTTCACATAATGCTAAAT 2697 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| || |||||||||| | ||||| |||| ||||||||| ||| ||||||||| Sbjct 2698 ATTGGCGTGATACCGATAGCGAATAAGTACTGTGAAGGAAAGATGAGAAGGACTTTGGAA 2757 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||| ||| | ||| |||||||| || |||||| ||| ||| ||| Sbjct 2758 AGAGGGTT-AGAAGTGTCTGAAATTGCTGTAAGGGAGGCGATTGAAAC 2804 >seq3102 Length=92657 Score = 109 bits (120), Expect = 2e-21 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||| || Sbjct 1255 CTGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGTCAGGCGAAAGCCT 1196 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCA 652 | |||||||||| |||| | ||| |||||| Sbjct 1195 GATGGAGGCTCGTAGCGATACTGACGTGCA 1166 >seq3157 Length=86501 Score = 102 bits (112), Expect = 3e-19 Identities = 78/91 (86%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 108 GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTT 167 ||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||| Sbjct 82258 GAGACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAACGACTTTGGAAAGAGAGTT 82317 Query 168 AAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 ||||| |||||||| |||||||||||| Sbjct 82318 -AAAAGTGTCTGAAATTGCTGAAAGGGAAGC 82347 >seq754 Length=12608 Score = 91.5 bits (100), Expect = 6e-16 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 ||||||||||| | ||||||||| ||| ||||||| || | |||| ||||||| || Sbjct 1198 GCTAAATATTGACGTGAGACCGATGGCGAACAAGTACTGTTAAGGAAATGTGAAAAGGAC 1139 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 || | |||||||||| ||||| |||||||| |||| |||| ||| ||| ||| Sbjct 1138 TTCGAAAAGAGAGTT-AAAAGTGTCTGAAATTGCTGAATGGGAGGCGATTGAAAC 1085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079923552200