Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1644 183 9e-44 seq1216 176 1e-41 seq1515 136 1e-29 seq3135 86.0 2e-14 >seq1644 Length=4506 Score = 183 bits (202), Expect = 9e-44 Identities = 182/231 (79%), Gaps = 11/231 (5%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 272 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCTCGCACAAGCGGTGGAGCAT 213 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||| ||||||||||||||| | |||| || | || | Sbjct 212 GTGGTTTAATTCGATGCAACACGAAGAACCTTACCAGAGTTTGAAAT-ATTTG--TTATT 156 Query 121 TAGAGAT--AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 | | || | | ||| || ||| | ||||| | ||||||| ||||||| Sbjct 155 AAAAAATTAATAATTTT----TTATAATTACAAA--TACAGGAGGTGCATGGCTGTCGTC 102 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTA 229 ||||||||||||||||||||||||||||||||| |||||||| | |||||| Sbjct 101 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGTAACGAGCGTAGCCCTTA 51 >seq1216 Length=6849 Score = 176 bits (194), Expect = 1e-41 Identities = 261/365 (72%), Gaps = 19/365 (5%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||| ||||| | ||||||||| ||||||||| Sbjct 2630 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGGCGGGGGCTCGCACAAGCAGTGGAGCAT 2571 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | ||||||||||||||||||| |||| | | | || Sbjct 2570 GTGGTTTAATTCGATGTAACGCGAAGAACCTTACCAGCGTTTGAAA---TATTTATTTTC 2514 Query 121 TAGAGAT--AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 | | || | | ||| || ||| | ||||| | ||||||| ||||||| Sbjct 2513 AAAAAATTAATAATTTT----TTATAACTACAAA--TACAGGAGGTGCATGGCTGTCGTC 2460 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 ||||||||||||||||||| ||||||||||||| |||||||| | |||||| |||| Sbjct 2459 AGCTCGTGTCGTGAGATGTCGGGTTAAGTCCCGTAACGAGCGTAGCCCTTATTTAAAGTT 2400 Query 239 -GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 | ||| |||| || | | || | | || | || |||| |||| | Sbjct 2399 AACTATCTTTAA---AAACAGCCAATATTTATT----GTAAAAATAAGGAGAAAGGAATG 2347 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 | ||||||| | |||||||| |||| | ||||||| | ||||||||||||||| Sbjct 2346 AAAAACGTCAAGCCCTCATGCCCTTTATACTCTGGGCTATATACGTGCTACAATGGATGG 2287 Query 358 TACAA 362 ||||| Sbjct 2286 TACAA 2282 >seq1515 Length=47061 Score = 136 bits (150), Expect = 1e-29 Identities = 253/365 (69%), Gaps = 26/365 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||| ||||||||| | |||||| |||||||||||| Sbjct 13293 TACGCTCGCAAGATTGAAACTC-------TTGACGGGGGCTCGCACAGGCGGTGGAGCAT 13345 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||| ||||| | || ||||||||||| ||| | |||| || | || | Sbjct 13346 GTGGTTTAGTTCGATGTAAAACGAAGAACCTTGCCAGAGTTTGAAATATT-TGTTT--TT 13402 Query 121 TAGAGAT--AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 | | || | | ||| || ||| | ||||| | ||||||| ||||||| Sbjct 13403 AAAAAATTAATAATTTT----TTATAATTACAAAT--ACAGGAGGTGCATGGCTGTCGTC 13456 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 ||||||||||||||||| |||||||||||| || |||||||| | || ||| |||| Sbjct 13457 AGCTCGTGTCGTGAGATTTTGGGTTAAGTCACGTAACGAGCGTAGCCATTATTTAAAGTT 13516 Query 239 GCC-ATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 || | | |||| || ||| || | | | || ||||||||| | Sbjct 13517 ACCTAGCTTTAA---AAACAGCCTATATTTATT----ATATAAATAAGGAGGAAGGAATG 13569 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||| || | |||||| |||| | ||||||| ||||||||||||||||| Sbjct 13570 GAAAACGTCAGGTCTTTATGCCCTTTATACTCTGGGCTATACACGTGCTACAATGGATGG 13629 Query 358 TACAA 362 ||||| Sbjct 13630 TACAA 13634 >seq3135 Length=28685 Score = 86.0 bits (94), Expect = 2e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 164 TGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAA 223 ||||||| ||||||| ||| ||||||||| |||||||||||||||||| |||||||| | Sbjct 20785 TGCATGGCTGTCGTCTGCTTGTGTCGTGAAATGTTGGGTTAAGTCCCGTAACGAGCGTAG 20844 Query 224 CCCTTAA 230 |||||| Sbjct 20845 GCCTTAA 20851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503946397440