Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1644 114 3e-23 seq1515 114 3e-23 seq1216 96.9 7e-18 >seq1644 Length=4506 Score = 114 bits (126), Expect = 3e-23 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||| |||| ||| ||||| || |||||||||||| ||||||||||||||| ||| | | Sbjct 752 TCAAGCTTGCGCTCATTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGGAGTTTGGGCTG 811 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 | | ||| | ||| |||| |||||| |||||||| ||| ||| |||| ||||||| | Sbjct 812 TATTTCAATCCCAATGTGGCTGATCCCCCTCTCAGGGCAGCTACTGATCTTCGCCTTAAT 871 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGA 197 || |||| || | || ||||||||| || Sbjct 872 AAGTTATTATCTTATTAATTAGCTAATCAGA 902 >seq1515 Length=47061 Score = 114 bits (126), Expect = 3e-23 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||| |||| ||| ||||| || |||||||||||| ||||||||||||||| ||| | | Sbjct 12816 TCAAGCTTGCGCTCATTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGGAGTTTGGGCTG 12757 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 | | ||| | ||| |||| |||||| |||||||| ||| ||| |||| ||||||| | Sbjct 12756 TATTTCAATCCCAATGTGGCTGATCCCCCTCTCAGGGCAGCTACTGATCTTCGCCTTAAT 12697 Query 167 GAGCCATTACCTCACCAACTAGCTAATC 194 || |||| || | || ||||||||| Sbjct 12696 AAGTTATTATCTTATTAATTAGCTAATC 12669 >seq1216 Length=6849 Score = 96.9 bits (106), Expect = 7e-18 Identities = 126/171 (74%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 29 CACGCGGC-ATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCT 87 |||||| | ||| ||| ||| |||| ||| ||||| || |||| ||||||| |||| Sbjct 3087 CACGCGACGATTCTCTG--TCAAGCTTGCGCTCATTGCAGAAGATTCTCCACTGCAGCCT 3144 Query 88 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGT 147 ||||||||||| ||| | || | ||| | ||| ||| |||||| |||||||| ||| Sbjct 3145 CCCGTAGGAGTTTGGGCTGTATTTCAATCCCAAGGTGGCTGATCCCCCTCTCAGGGCAGC 3204 Query 148 TACGGATCGTCGCCTT-GGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 ||| ||| ||||||| | || |||| || | || ||||||||| || Sbjct 3205 TACTAATCTTCGCCTTAATTAAGTTATTATCTTATTAATTAGCTAATCAGA 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071961793920