Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2471 116 4e-24 seq3406 102 1e-19 seq1007 102 1e-19 seq1596 87.8 2e-15 >seq2471 Length=2597 Score = 116 bits (128), Expect = 4e-24 Identities = 101/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 || ||||||||||||||||| || | ||||||||| ||||||||||||| |||||||| Sbjct 1646 TCCAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCCATTATTCCATGCTTATGTATTC 1588 Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC 124 ||| || ||||||||||||||||||||| |||| ||||| ||| | |||| || Sbjct 1587 AAGCGCTGGCTTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGTCACAGATCCTGAGC 1528 Query 125 ACAC 128 |||| Sbjct 1527 ACAC 1524 >seq3406 Length=16985 Score = 102 bits (112), Expect = 1e-19 Identities = 89/107 (83%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC- 64 ||||||||||||||||||| || | |||||||||||||||| |||||| |||||| Sbjct 16415 CTAGAAACCAACAAAATAGAACCG-AGGTCCTATTCTATTATTTCATGCTGCAGTATTCA 16357 Query 65 GGGCG-TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 ||||| |||| ||||| |||||| || ||||||||| |||||||| Sbjct 16356 GGGCGACAAGCGTGCTTGAAACACTTTATTTTTCTCAAAGTAAAAGT 16310 >seq1007 Length=55227 Score = 102 bits (112), Expect = 1e-19 Identities = 89/107 (83%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC- 64 ||||||||||||||||||| || | ||||||| |||||||||||||| |||||| Sbjct 89 CTAGAAACCAACAAAATAGAACCG-AGGTCCTATCTTATTATTCCATGCTGCAGTATTCA 147 Query 65 GGGCG-TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 ||||| || ||||||| ||||||||| ||||||||| |||||||| Sbjct 148 GGGCGACAAACCTGCTTGAAACACTCTATTTTTCTCAAAGTAAAAGT 194 >seq1596 Length=5565 Score = 87.8 bits (96), Expect = 2e-15 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTC-GGGCG-TAAGCCTGCTTTGAACACTCT 90 ||||||| ||||||||||||||| |||||| ||||| |||||||||| |||||||| Sbjct 187 GTCCTATCCTATTATTCCATGCTGCAGTATTCAGGGCGACAAGCCTGCTTGAAACACTCT 128 Query 91 AATTTTCTCAAGGTAAAAGT 110 | ||||||||| |||||||| Sbjct 127 ATTTTTCTCAAAGTAAAAGT 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595179449976