Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2471 167 2e-39 seq1007 147 2e-33 seq3406 131 2e-28 >seq2471 Length=2597 Score = 167 bits (184), Expect = 2e-39 Identities = 147/181 (81%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| |||||||||| ||| ||| |||||||| | || Sbjct 1541 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGCCAGCGCTTGAATACATAAGCA 1600 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||| ||||||||| | ||||||||||||| ||||||| ||| | |||||| Sbjct 1601 TGGAATAATGGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCT-GGAACCTTAGTAATG 1658 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | || ||| ||||| | ||||| |||||| ||||||||||||||||||| Sbjct 1659 ATTAAGAGAGACAGTTGGGGGCATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTT 1718 Query 189 A 189 | Sbjct 1719 A 1719 >seq1007 Length=55227 Score = 147 bits (162), Expect = 2e-33 Identities = 145/184 (79%), Gaps = 9/184 (5%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT-GCTC-GAATACATTACC 67 ||||||||||||| |||| ||||| ||| ||||||| | | || | |||||| | | Sbjct 194 ACTTTTACTTTGAGAAAAATAGAGTGTTTCAAGCAGGTTTGTCGCCCTGAATACTGCAGC 135 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 ||||||||||| ||||||| | |||||||||||||| ||||||||||||| ||| Sbjct 134 ATGGAATAATAAGATAGGACCT-CGGTTCTATTTTGTTGGTTTCTAGGACC------AAT 82 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||| ||| ||||| | ||||| || ||||| ||||||||||||| |||| Sbjct 81 GATTAATAGGGACAGTTGGGGGCATTCGTATTTAACTGTCAGAGGTGAAATTCTTAGATT 22 Query 188 TATT 191 | || Sbjct 21 TGTT 18 >seq3406 Length=16985 Score = 131 bits (144), Expect = 2e-28 Identities = 144/186 (77%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT-GCTC-GAATACATTACC 67 ||||||||||||| |||| || || ||| ||||| || | | || | |||||| | | Sbjct 16310 ACTTTTACTTTGAGAAAAATAAAGTGTTTCAAGCACGCTTGTCGCCCTGAATACTGCAGC 16369 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC--GCCCGTA 125 ||| |||||||||||||||| | |||||||||||||| ||||||||||||| | | | Sbjct 16370 ATGAAATAATAGAATAGGACCT-CGGTTCTATTTTGTTGGTTTCTAGGACCAAGAC---A 16425 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| |||| ||| ||| ||||| | |||| || ||||| |||| |||||||| | Sbjct 16426 ATGATTAATAGGGACAGTTGGGGGCATTCATATTTAACTGTCAGAGGTTAAATTCTTACA 16485 Query 186 TTTATT 191 ||| || Sbjct 16486 TTTGTT 16491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511982322560