Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1644 111 4e-22 seq1515 105 2e-20 seq1216 93.3 1e-16 >seq1644 Length=4506 Score = 111 bits (122), Expect = 4e-22 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 ||||| | |||||| | ||| ||| |||||||| ||||| || ||||||||||| Sbjct 727 TCTTCCTTCACGCGACGATGCTCTGTCAAGCTTGCGCTCATTGCAGAAGATTCCCCACTG 786 Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 | ||||||||||||||| ||| | || | ||| | ||| |||||||| || |||||||| Sbjct 787 CAGCCTCCCGTAGGAGTTTGGGCTGTATTTCAATCCCAATGTGGCTGATCCCCCTCTCAG 846 Query 143 ACCAGCTAGGGATCGTCGCCT 163 |||||| |||| |||||| Sbjct 847 GGCAGCTACTGATCTTCGCCT 867 >seq1515 Length=47061 Score = 105 bits (116), Expect = 2e-20 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 ||| |||||||| ||||| || |||||||||||| ||||||||||||||| ||| | | Sbjct 12816 TCAAGCTTGCGCTCATTGCAGAAGATTCCCCACTGCAGCCTCCCGTAGGAGTTTGGGCTG 12757 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | | ||| | ||| |||||||| || |||||||| |||||| |||| |||||| Sbjct 12756 TATTTCAATCCCAATGTGGCTGATCCCCCTCTCAGGGCAGCTACTGATCTTCGCCT 12701 >seq1216 Length=6849 Score = 93.3 bits (102), Expect = 1e-16 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 ||| |||||||| ||||| || |||| ||||||| ||||||||||||||| ||| | | Sbjct 3104 TCAAGCTTGCGCTCATTGCAGAAGATTCTCCACTGCAGCCTCCCGTAGGAGTTTGGGCTG 3163 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | | ||| | ||| ||||||| || |||||||| |||||| ||| |||||| Sbjct 3164 TATTTCAATCCCAAGGTGGCTGATCCCCCTCTCAGGGCAGCTACTAATCTTCGCCT 3219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222356433664