Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1644 217 4e-54 seq1515 197 4e-48 seq1216 168 2e-39 seq1308 77.0 1e-11 >seq1644 Length=4506 Score = 217 bits (240), Expect = 4e-54 Identities = 252/335 (75%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||| || |||| ||| |||| ||||||| |||||||||| | ||||| Sbjct 902 TCTGATTAGCTAATTAATAAGATAATAACTTATTAAGGCGAAGATCAGTAGCTGCCCTGA 843 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 ||||| |||| |||||||||| | ||| | || | ||||||||||||||||||| ||||| Sbjct 842 GAGGGGGATCAGCCACATTGGGATTGAAATACAGCCCAAACTCCTACGGGAGGCTGCAGT 783 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| || ||||| || |||| ||| |||| || ||||||| || || || Sbjct 782 GGGGAATCTTCTGCAATGAGCGCAAGCTTGACAGAGCATCGTCGCGTGAAGGAAGACAGC 723 Query 344 --CTTCGGGTCGTAAAGCTCTGT--CCTCAAGGAAGATAATGACGGTACTTGAG--GAGG 397 || || ||||| ||| | | | || | ||| |||| |||| || | Sbjct 722 TTATTATAGTTGTAAACTTCTTTTGCTTAAAAGTGAATACTGAC---ACTTAAGTAAATA 666 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||| |||| |||| |||||||||||||||||||| ||| || | ||||||||||| Sbjct 665 AAGTATCGGCAAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGATACAAGCGTTATCCG 606 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||||||| |||||||||| || ||||||||||| Sbjct 605 GAATTACT-GGGCGTAAAGCGTATGTAGGTGGTTT 572 >seq1515 Length=47061 Score = 197 bits (218), Expect = 4e-48 Identities = 249/335 (74%), Gaps = 14/335 (4%) Strand=Plus/Plus Query 166 TGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 |||||||||| || |||| ||| |||| ||||||| |||||||||| | ||||||| Sbjct 12668 TGATTAGCTAATTAATAAGATAATAACTTATTAAGGCGAAGATCAGTAGCTGCCCTGAGA 12727 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 ||| |||| |||||||||| | ||| | || | ||||||||||||||||||| ||||||| Sbjct 12728 GGGGGATCAGCCACATTGGGATTGAAATACAGCCCAAACTCCTACGGGAGGCTGCAGTGG 12787 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-- 343 ||||| || ||||| || |||| ||| |||| || ||| ||| || || || Sbjct 12788 GGAATCTTCTGCAATGAGCGCAAGCTTGACAGAGCATCGTCGCTTGAAGGAAGACAGCTT 12847 Query 344 CTTCGGGTCGTAAAGCTCTGT--CCTCAAGGAAGATAATGACGGTACTTGAG--GAGGAA 399 || || ||||| ||| | | | || | | ||| |||| |||| || | || Sbjct 12848 ATTATAGTTGTAAACTTCTTTTGCTTAAAAGTAAATACTGAC---ACTTAAGTAAATAAA 12904 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG--GCTAGCGTTATCCG 457 | ||| || | |||||||||||||||||||| || ||||| | ||||||||||| Sbjct 12905 GTATGGGCAAATTCCGTGCCAGCAGCCGCGGTAAAAC--AGGGGATACAAGCGTTATCCG 12962 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||||||| |||||||||| || | ||||||||| Sbjct 12963 GAATTACT-GGGCGTAAAGCGTATGCAGGTGGTTT 12996 >seq1216 Length=6849 Score = 168 bits (186), Expect = 2e-39 Identities = 241/333 (72%), Gaps = 10/333 (3%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACC-AAGGCGACGATCAGTAGCCGACCTG 222 |||||||||||| || |||| ||| |||| ||||||| ||| |||||| | |||| Sbjct 3255 TCTGATTAGCTAATTAATAAGATAATAACTTAATTAAGGCGAAGATTAGTAGCTGCCCTG 3196 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 |||||| |||| ||||| |||| | ||| | || | ||||||||||||||||||| |||| Sbjct 3195 AGAGGGGGATCAGCCACCTTGGGATTGAAATACAGCCCAAACTCCTACGGGAGGCTGCAG 3136 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 ||| |||| || ||||| || |||| ||| || | || ||||||| || || | Sbjct 3135 TGGAGAATCTTCTGCAATGAGCGCAAGCTTGACAGAGAATCGTCGCGTGAAGGAAGACAG 3076 Query 343 C--CTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAA 399 | || || ||||| || | | || | |||| |||| | ||| | || Sbjct 3075 CTTATTATAGTTGTAAACTTCTTTTGCTTA--GAAGTGAATGTTGACGCTT---AATAAA 3021 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 | ||| |||| | ||||||||| ||| |||| ||| || | ||||||||||||| Sbjct 3020 GTATTGGCAAACTCCTTGCCAGCAGGCGCTGTAAAACGGGGGATACAAGCGTTATCCGGA 2961 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||||| |||||||||| || ||||||||||| Sbjct 2960 ATTACT-GGGCGTAAAGCGTATGTAGGTGGTTT 2929 >seq1308 Length=6291 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260 |||| ||||| || | ||||||| || |||| |||||||||| | ||| | || | || Sbjct 5029 GCGAAGATCATCAGTTGCCCTGAGAAGGGGATCAGCCACATTGGGATTGAAATACAGCCC 5088 Query 261 AAACTCCTACGGGAGGCAGCAG 282 ||||||||||||||||| |||| Sbjct 5089 AAACTCCTACGGGAGGCTGCAG 5110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497546625536